Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq428 140 3e-28 seq1 105 5e-18 seq323 104 2e-17 seq30 98.7 8e-16 seq163 86.0 5e-12 seq186 82.4 6e-11 >seq428 Length=75711847 Score = 140 bits (154), Expect = 3e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || ||| Sbjct 61914292 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 61914233 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || || |||||||| |||||||| || ||||| | || | Sbjct 61914232 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 61914173 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | |||||||| ||||| || ||||| ||| Sbjct 61914172 ACATAGAACTGGCAGAGAGCATGGCATGGAGGCAGTGCCATCAGA 61914128 Score = 102 bits (112), Expect = 7e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || |||| ||| || ||||| ||| ||| Sbjct 61909476 AAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTCCCCTTCTTCTCTGGCGGAGAAC 61909417 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||||||||||| ||| || ||||| |||||||| || || ||||| Sbjct 61909416 CCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 61909357 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || |||||||| | ||||| || || Sbjct 61909356 GACAGCTCTTTAGCATTTGTAGATCC 61909331 >seq1 Length=227556264 Score = 105 bits (116), Expect = 5e-18 Identities = 187/267 (70%), Gaps = 12/267 (4%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| |||| || | || | | Sbjct 82658578 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGTACTAAATTAATTCTACCCTT 82658637 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 82658638 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 82658697 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 114440 ||| |||||| | ||||| || | |||| | ||| | || | | | || || || Sbjct 82658698 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATT-- 82658754 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 114499 || | ||| || | ||||| || || || || |||||||||||| ||||| || Sbjct 82658755 ----CCTGAGCGGCGGCGAAGGCAGGTCCCCATTCTTGCCGATGCCCATGTTCTGG-GAC 82658809 Query 114500 GCTGCCACGATACCGTTCAG--AATGA 114524 | || ||||| | ||| || ||||| Sbjct 82658810 ACAGCGACGATGCAGTTTAGCAAATGA 82658836 >seq323 Length=111193037 Score = 104 bits (114), Expect = 2e-17 Identities = 183/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| |||| || | || | | Sbjct 42476599 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 42476658 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 42476659 TAAAGGTCAATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 42476718 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 114440 ||| |||||| | ||||| | | |||| | ||| | || | | | || || || | Sbjct 42476719 CTGTTTACCTTCTACTGAAGAGTTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTCC 42476777 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 114499 || || || |||| ||||| || | ||| || |||||||||||| ||||| || Sbjct 42476778 TGAG---CAGCG---GCCAGGGCAGGTCCCGGTTCTTGCCGATGCCCATGTTCTGG-GAC 42476830 Query 114500 GCTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 42476831 ACAGCGACGATGCAGTTTAG 42476850 >seq30 Length=192460366 Score = 98.7 bits (108), Expect = 8e-16 Identities = 180/261 (69%), Gaps = 11/261 (4%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| |||| || | || || | Sbjct 177879996 ATGAGCTCCTTGAGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 177879937 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 177879936 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 177879877 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC---GAAAGTGTTTAAAATCTTT 114438 ||| |||||| | ||||| | | ||| || || | || | | || || || Sbjct 177879876 CTGTTTACCTTCTACTGAAGAAGGTGTGGT---GGTTCTCTGGAAATACCTGAATTCATT 177879820 Query 114439 GCAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACA 114498 | | ||| || |||| ||||| || || || || ||||||||||||| | | | Sbjct 177879819 CC--TGATTCAACG---GCCAGGGCAGTTCCCCATTCTTGCCGATGCCCATGTTTTGGGA 177879765 Query 114499 CGCTGCCACGATACCGTTCAG 114519 | | || ||||| | ||| || Sbjct 177879764 CACAGCGACGATGCAGTTTAG 177879744 >seq163 Length=189454096 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| ||| || | || | | Sbjct 15633798 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGATCTAAATTAATTCTACCCTT 15633857 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | |||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 15633858 TAAAGGTTGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 15633917 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCA 114413 ||| |||||| | ||||| || | ||||| Sbjct 15633918 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCA 15633949 >seq186 Length=181584905 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || |||||||| |||| || | || | | | ||||| |||||| || || Sbjct 78922246 TTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCGATTCTTCTCAGGA 78922305 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||||||||| ||||||| ||||||| ||||| |||||| Sbjct 78922306 ATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCT 78922353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406125574183486