Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq481 264 1e-65 seq313 136 3e-27 seq246 107 2e-18 seq93 104 2e-17 seq323 91.5 1e-13 seq228 89.7 4e-13 seq30 86.0 5e-12 seq163 84.2 2e-11 >seq481 Length=152835861 Score = 264 bits (292), Expect = 1e-65 Identities = 520/760 (68%), Gaps = 18/760 (2%) Strand=Plus/Plus Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || ||| || ||||| || || || || |||| || ||| || || ||||| | | Sbjct 42596887 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 42596946 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 |||||| | || | || | || || |||||||| || || | | ||| | || Sbjct 42596947 CACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTCTTTC 42597006 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATC 4558 | ||| | | || | ||||||| | ||| | || |||| | || |||||||| Sbjct 42597007 TCTTACTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAATC 42597066 Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 ||| || ||||| || |||| ||||| ||||| || ||||| || | || ||||| | Sbjct 42597067 ACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAG 42597126 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 |||| || || ||||| ||||| | ||||| | ||||||||| |||||||| | Sbjct 42597127 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATGCCTTCCGC 42597183 Query 4679 GGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTA 4737 || ||||| |||| | || ||| | | |||| |||||||| |||||| | | Sbjct 42597184 TGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCT-GCTTTGTCCCCAATCCAGTGCA 42597242 Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAATT 4794 | ||||| | || || ||||| || || || || || | || || || || |||| Sbjct 42597243 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATT 42597302 Query 4795 TACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAA 4853 |||| || |||| |||| || |||||||| || || | ||||||||| ||||| Sbjct 42597303 CCCTTTCTT----TGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAA 42597358 Query 4854 TGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACT 4913 ||||| ||||| || ||||| || || || | || || | |||||||| || |||||| Sbjct 42597359 TGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACT 42597418 Query 4914 TCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAAC 4973 || | | | ||| || || |||||| | |||||||| || ||||| || ||||| || Sbjct 42597419 TCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAA 42597477 Query 4974 GCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAA 5033 ||| |||||| |||||||| || || || ||||| || || ||||| | |||| Sbjct 42597478 ACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGAATTCCCAGT--GCCAAA 42597535 Query 5034 --TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACA 5091 || || | || || || || | ||||| || || |||||||| || || |||| Sbjct 42597536 TGTCCTTGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACA 42597595 Query 5092 TAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 | ||| |||||| | |||| || || | |||||||| Sbjct 42597596 TCTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 42597635 Score = 156 bits (172), Expect = 4e-33 Identities = 327/483 (68%), Gaps = 11/483 (2%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| | ||| || ||||| || || |||||||| ||||| || ||||| || | Sbjct 141149876 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 141149817 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | ||| || || ||||| ||||| ||||| || ||||||||||| Sbjct 141149816 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 141149757 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTA 4727 ||| ||| || |||||| ||| | | || || | | |||||| | Sbjct 141149756 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 141149697 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787 ||||| | |||| || || ||||| || || || ||||| || || || Sbjct 141149696 ATCCAACACTAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTCCAATGGCATTG 141149638 Query 4788 AATA---ATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 || | ||| |||| || || |||| ||| | ||||| || || || |||| Sbjct 141149637 AAGAGAAATTCCCTTTCTT----TGTTATCTTTAATGT--GTGTCAATAAGGAGACTATT 141149584 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 || ||||||||||| |||||| ||||||| || || || | ||||| | |||||| Sbjct 141149583 TATGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATGGAAGCAGAAGGTTTCTGT 141149524 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 | |||| ||| | | |||| ||| || |||||||| | |||||| || |||| || Sbjct 141149523 AATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGC 141149464 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 |||||| || |||| || || |||||||| || ||| |||||||| || || ||| Sbjct 141149463 TGCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCA 141149404 Query 5024 GTG 5026 ||| Sbjct 141149403 GTG 141149401 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCT 31834 ||||| | ||||| || || | ||||| || || || ||| || | |||| | ||| Sbjct 146809817 AAAACGAACATTCAGATAGCTCTTCCTTCTGGATGTTATGGAGGAGTGGCTCT--GGTCT 146809874 Query 31835 GGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGA 31894 || |||| | ||||||||||| || | || || ||||| |||||| ||| |||| | Sbjct 146809875 GGCCTGGCTGCAAAACACTTTATAGATATAGGAGCTGGTGTCATAGATGAAGAGTATACA 146809934 Query 31895 GGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||||| ||||| ||| ||| |||||||||| Sbjct 146809935 GGAAATGTTGGCGCTGTCTTGCTTAATTTTGG 146809966 >seq313 Length=132586672 Score = 136 bits (150), Expect = 3e-27 Identities = 164/220 (75%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| || ||||| || | | ||||| ||||| || ||| || |||| Sbjct 63792444 AGCTCTTGTGAAAACGGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAGTAGC 63792503 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| || || || ||||| | ||||||||||| || || || || ||||| |||||| Sbjct 63792504 TCCAAGGTCAGGCTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGATGA 63792563 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| ||||||||||| ||||| |||| ||||||||||||| |||||| | | || Sbjct 63792564 AGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTTTGGCAAAGAAAAGT-TTGAAG 63792622 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 | |||||||| ||| | | || || || ||||||||| Sbjct 63792623 --TCAAAAAGGGTGATCGAATTGCACAGCTCATTTGCGAA 63792660 >seq246 Length=133195287 Score = 107 bits (118), Expect = 2e-18 Identities = 159/221 (72%), Gaps = 7/221 (3%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| || ||||| || | | ||||| ||||| || ||| || |||| Sbjct 91140850 AGCTCTTGTGAAAACGGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAGTAGC 91140791 Query 31825 TCCTAGATCTGGATTGGCA-GTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATT 31883 ||| || || ||||| | ||||||||||| || || || || ||||| |||||| Sbjct 91140790 TCCACAGTCAGGCTTGGCTTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGATG 91140731 Query 31884 CAGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACA 31940 ||| ||||||||||| ||||| ||| ||||||| ||||| |||||| | | | Sbjct 91140730 AAGATTATAGAGGAAATGTTGGTGGTGTACTGTTTAACTTTGGCAAAGAAAAGT-TTGAA 91140672 Query 31941 GTATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 | | |||||| | ||| | | || || || ||||||||| Sbjct 91140671 G--TCAAAAAGTGTGATCGAATTGCACAGCTCATTTGCGAA 91140633 >seq93 Length=170955103 Score = 104 bits (114), Expect = 2e-17 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCA--GGGTGCTACGGACGAATAGCTCCTAGAT 31832 ||||| || ||||| || || | ||||| ||||| || ||| || ||| ||| | | Sbjct 88425370 AAAACAGACATTCAGATAGCTCTTCCTTCTCTGGGTGTTATGGAAGAGTAGTTCCATGGT 88425429 Query 31833 CTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATA 31892 |||| ||||| | ||||||||||| || || || || ||||| |||||| | | |||| Sbjct 88425430 CTGGCTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGATGAAAATTATA 88425489 Query 31893 GAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||||||| |||| |||| ||||||||||||| Sbjct 88425490 GAGGAAATATTGGTGTTGTACTGTTTAATTTTGG 88425523 >seq323 Length=111193037 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| || |||||||| || || || |||||||||||||||||||| ||||| || Sbjct 100858290 GGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATG 100858349 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||| || || || || || || | |||||||| | |||||||| | | ||||| Sbjct 100858350 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 100858407 >seq228 Length=146850525 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| ||||| || || ||||||||||||||||| || || | Sbjct 103375212 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 103375268 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| || ||||||| || || | ||||| || |||||||| || | ||| || | Sbjct 103375269 TGTGAGAGATGAAGTACTTCTCATCTGCTTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 103375328 Query 5041 TTAAATCAAC 5050 ||| || || Sbjct 103375329 ATAAGTCGAC 103375338 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 103356739 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 103356798 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 103356799 ATAAAATCAAAAGGATT 103356815 >seq30 Length=192460366 Score = 86.0 bits (94), Expect = 5e-12 Identities = 166/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 31771 AGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAG 31830 ||| |||| | ||||| || || | ||||| |||| || || || ||||| | Sbjct 146828258 AGTGAAAATGGGCATTCAGATAGCTCTTCCTTCTGGGTTTTATAGAAGAGGGGCTCCATG 146828199 Query 31831 ATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTA 31890 ||||| ||||| | |||||||||||||| || || | ||||| ||||| ||| || Sbjct 146828198 GTCTGGCTTGGCTGCAAAACACTTTATCGATGTAGGAACTGGTGTCATAGACGAAGATTA 146828139 Query 31891 TAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAA 31947 ||||||| ||||| ||| ||||||||||||| |||||| | || ||| || Sbjct 146828138 CTGAGGAAATGTTGGTGCTGTACTGTTTAATTTTGGCAAAGAAAAGT-TTAAAGTCAGAA 146828080 Query 31948 AAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAATAGAAGT 32007 ||| | ||| | | || || || ||||| ||| ||| | || ||||||||| Sbjct 146828079 AAA--GTGATCGCATTGCACAGCTCATTTGTGAATGAATTTTTAATCCAGAAATAGAAGA 146828022 Query 32008 AG 32009 || Sbjct 146828021 AG 146828020 Score = 84.2 bits (92), Expect = 2e-11 Identities = 172/252 (68%), Gaps = 8/252 (3%) Strand=Plus/Minus Query 34294 AAAGGAAACAGCAAAAAC---ATACAAATGGTTCAGTATATTTATAAAAACACATCTTCT 34350 |||| ||||| || ||| | ||||||||| || |||||||| ||| ||||| || | Sbjct 76744854 AAAGAAAACACAAAGAACGACAAACAAATGGTCCAATATATTTACAAATACACAAGTTAT 76744795 Query 34351 TACGGAGATCCTCTAATGTTGATGAAAAGCGCTAGAAGTAACTGCTGGGATAAAACCGCT 34410 | | ||| || || |||||||||||||||||| || || ||| |||| || Sbjct 76744794 CCTG---ACCCTATACTGCTGATGAAAAGCGCTAGAAATAGTTGTTGGTCTAAAGATGCA 76744738 Query 34411 GAGTACGGTCTTTACTCAGTATATCAAGGAGGAATACACTATCTaaaaaaaGGAGATAGT 34470 || ||||| || || || | |||||||| ||| || | || || |||| || || Sbjct 76744737 GAATACGGACTCTATTCCATCTATCAAGGGGGATTATTTGAGCTTAAGAAAGATGACAGA 76744678 Query 34471 GTGTTTGTAACAGTTACTAACAAAAACTTTTTAGCGATGGACTACAGAAGTGA-CTATTT 34529 | ||||| | || || || | |||| ||| |||||| | |||| | || ||| Sbjct 76744677 ATTTTTGTTTCTGTAACAAATGAGCACTTGATAGACATGGACCA-TGAAGCCAGCTTTTT 76744619 Query 34530 TGGAGCGTTTTT 34541 || || ||||| Sbjct 76744618 CGGGGCCTTTTT 76744607 >seq163 Length=189454096 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/180 (72%), Gaps = 7/180 (4%) Strand=Plus/Plus Query 31776 AAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTG 31835 |||| || ||| | || || ||||| ||| | ||| || ||||||| ||| ||| Sbjct 82646747 AAACAGACATTTAGATAGCTCCTCCTTCCACGTGTTGTGGAAGAGTAGCTCC-AGA-CTG 82646804 Query 31836 GATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAG 31895 | ||||| | ||||||||||| || || || | ||||| ||||| ||| || |||| Sbjct 82646805 GCTTGGCTGCAAAACACTTTATAGATGTAGGAGGTGGTGTCATAGAGGAAGATTACAGAG 82646864 Query 31896 GAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAAAAAGG 31952 |||| ||||| ||| ||||||||||||| |||||| || | ||| |||||||| Sbjct 82646865 GAAATGTTGGTGCTGTACTGTTTAATTTTGGCAAAGAAAAGTC-TGAAGT-CAAAAAAGG 82646922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427010039326133