Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12]
7,601 sequences; 2,946,843,737 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq481 264 1e-65
seq313 136 3e-27
seq246 107 2e-18
seq93 104 2e-17
seq323 91.5 1e-13
seq228 89.7 4e-13
seq30 86.0 5e-12
seq163 84.2 2e-11
>seq481
Length=152835861
Score = 264 bits (292), Expect = 1e-65
Identities = 520/760 (68%), Gaps = 18/760 (2%)
Strand=Plus/Plus
Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438
|| ||| || ||||| || || || || |||| || ||| || || ||||| | |
Sbjct 42596887 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 42596946
Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498
|||||| | || | || | || || |||||||| || || | | ||| | ||
Sbjct 42596947 CACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTCTTTC 42597006
Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATC 4558
| ||| | | || | ||||||| | ||| | || |||| | || ||||||||
Sbjct 42597007 TCTTACTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAATC 42597066
Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618
||| || ||||| || |||| ||||| ||||| || ||||| || | || ||||| |
Sbjct 42597067 ACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAG 42597126
Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678
|||| || || ||||| ||||| | ||||| | ||||||||| |||||||| |
Sbjct 42597127 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATGCCTTCCGC 42597183
Query 4679 GGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTA 4737
|| ||||| |||| | || ||| | | |||| |||||||| |||||| | |
Sbjct 42597184 TGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCT-GCTTTGTCCCCAATCCAGTGCA 42597242
Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAATT 4794
| ||||| | || || ||||| || || || || || | || || || || ||||
Sbjct 42597243 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATT 42597302
Query 4795 TACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAA 4853
|||| || |||| |||| || |||||||| || || | ||||||||| |||||
Sbjct 42597303 CCCTTTCTT----TGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAA 42597358
Query 4854 TGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACT 4913
||||| ||||| || ||||| || || || | || || | |||||||| || ||||||
Sbjct 42597359 TGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACT 42597418
Query 4914 TCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAAC 4973
|| | | | ||| || || |||||| | |||||||| || ||||| || ||||| ||
Sbjct 42597419 TCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAA 42597477
Query 4974 GCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAA 5033
||| |||||| |||||||| || || || ||||| || || ||||| | ||||
Sbjct 42597478 ACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGAATTCCCAGT--GCCAAA 42597535
Query 5034 --TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACA 5091
|| || | || || || || | ||||| || || |||||||| || || ||||
Sbjct 42597536 TGTCCTTGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACA 42597595
Query 5092 TAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131
| ||| |||||| | |||| || || | ||||||||
Sbjct 42597596 TCTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 42597635
Score = 156 bits (172), Expect = 4e-33
Identities = 327/483 (68%), Gaps = 11/483 (2%)
Strand=Plus/Minus
Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607
|| ||||| | ||| || ||||| || || |||||||| ||||| || ||||| || |
Sbjct 141149876 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 141149817
Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667
|| ||||| | ||| || || ||||| ||||| ||||| || |||||||||||
Sbjct 141149816 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 141149757
Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTA 4727
||| ||| || |||||| ||| | | || || | | |||||| |
Sbjct 141149756 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 141149697
Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787
||||| | |||| || || ||||| || || || ||||| || || ||
Sbjct 141149696 ATCCAACACTAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTCCAATGGCATTG 141149638
Query 4788 AATA---ATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843
|| | ||| |||| || || |||| ||| | ||||| || || || ||||
Sbjct 141149637 AAGAGAAATTCCCTTTCTT----TGTTATCTTTAATGT--GTGTCAATAAGGAGACTATT 141149584
Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903
|| ||||||||||| |||||| ||||||| || || || | ||||| | ||||||
Sbjct 141149583 TATGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATGGAAGCAGAAGGTTTCTGT 141149524
Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963
| |||| ||| | | |||| ||| || |||||||| | |||||| || |||| ||
Sbjct 141149523 AATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGC 141149464
Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023
|||||| || |||| || || |||||||| || ||| |||||||| || || |||
Sbjct 141149463 TGCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCA 141149404
Query 5024 GTG 5026
|||
Sbjct 141149403 GTG 141149401
Score = 87.8 bits (96), Expect = 2e-12
Identities = 111/152 (73%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCT 31834
||||| | ||||| || || | ||||| || || || ||| || | |||| | |||
Sbjct 146809817 AAAACGAACATTCAGATAGCTCTTCCTTCTGGATGTTATGGAGGAGTGGCTCT--GGTCT 146809874
Query 31835 GGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGA 31894
|| |||| | ||||||||||| || | || || ||||| |||||| ||| |||| |
Sbjct 146809875 GGCCTGGCTGCAAAACACTTTATAGATATAGGAGCTGGTGTCATAGATGAAGAGTATACA 146809934
Query 31895 GGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926
||||| ||||| ||| ||| ||||||||||
Sbjct 146809935 GGAAATGTTGGCGCTGTCTTGCTTAATTTTGG 146809966
>seq313
Length=132586672
Score = 136 bits (150), Expect = 3e-27
Identities = 164/220 (75%), Gaps = 6/220 (3%)
Strand=Plus/Plus
Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824
||| || || ||||| || ||||| || | | ||||| ||||| || ||| || ||||
Sbjct 63792444 AGCTCTTGTGAAAACGGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAGTAGC 63792503
Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884
||| || || || ||||| | ||||||||||| || || || || ||||| ||||||
Sbjct 63792504 TCCAAGGTCAGGCTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGATGA 63792563
Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941
||| ||||||||||| ||||| |||| ||||||||||||| |||||| | | ||
Sbjct 63792564 AGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTTTGGCAAAGAAAAGT-TTGAAG 63792622
Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981
| |||||||| ||| | | || || || |||||||||
Sbjct 63792623 --TCAAAAAGGGTGATCGAATTGCACAGCTCATTTGCGAA 63792660
>seq246
Length=133195287
Score = 107 bits (118), Expect = 2e-18
Identities = 159/221 (72%), Gaps = 7/221 (3%)
Strand=Plus/Minus
Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824
||| || || ||||| || ||||| || | | ||||| ||||| || ||| || ||||
Sbjct 91140850 AGCTCTTGTGAAAACGGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAGTAGC 91140791
Query 31825 TCCTAGATCTGGATTGGCA-GTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATT 31883
||| || || ||||| | ||||||||||| || || || || ||||| ||||||
Sbjct 91140790 TCCACAGTCAGGCTTGGCTTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGATG 91140731
Query 31884 CAGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACA 31940
||| ||||||||||| ||||| ||| ||||||| ||||| |||||| | | |
Sbjct 91140730 AAGATTATAGAGGAAATGTTGGTGGTGTACTGTTTAACTTTGGCAAAGAAAAGT-TTGAA 91140672
Query 31941 GTATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981
| | |||||| | ||| | | || || || |||||||||
Sbjct 91140671 G--TCAAAAAGTGTGATCGAATTGCACAGCTCATTTGCGAA 91140633
>seq93
Length=170955103
Score = 104 bits (114), Expect = 2e-17
Identities = 116/154 (75%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCA--GGGTGCTACGGACGAATAGCTCCTAGAT 31832
||||| || ||||| || || | ||||| ||||| || ||| || ||| ||| | |
Sbjct 88425370 AAAACAGACATTCAGATAGCTCTTCCTTCTCTGGGTGTTATGGAAGAGTAGTTCCATGGT 88425429
Query 31833 CTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATA 31892
|||| ||||| | ||||||||||| || || || || ||||| |||||| | | ||||
Sbjct 88425430 CTGGCTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGATGAAAATTATA 88425489
Query 31893 GAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926
||||||| |||| |||| |||||||||||||
Sbjct 88425490 GAGGAAATATTGGTGTTGTACTGTTTAATTTTGG 88425523
>seq323
Length=111193037
Score = 91.5 bits (100), Expect = 1e-13
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868
|| |||| || |||||||| || || || |||||||||||||||||||| ||||| ||
Sbjct 100858290 GGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATG 100858349
Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926
||||| || || || || || || | |||||||| | |||||||| | | |||||
Sbjct 100858350 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 100858407
>seq228
Length=146850525
Score = 89.7 bits (98), Expect = 4e-13
Identities = 98/130 (75%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980
|||||||| || || ||||| ||||| || || ||||||||||||||||| || || |
Sbjct 103375212 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 103375268
Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040
||||| || ||||||| || || | ||||| || |||||||| || | ||| || |
Sbjct 103375269 TGTGAGAGATGAAGTACTTCTCATCTGCTTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 103375328
Query 5041 TTAAATCAAC 5050
||| || ||
Sbjct 103375329 ATAAGTCGAC 103375338
Score = 86.0 bits (94), Expect = 5e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| || || || ||||| || || |||||||| ||||| |||||||| ||||| ||||||
Sbjct 103356739 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 103356798
Query 4320 ATAAAATCAAACGGATT 4336
||||||||||| |||||
Sbjct 103356799 ATAAAATCAAAAGGATT 103356815
>seq30
Length=192460366
Score = 86.0 bits (94), Expect = 5e-12
Identities = 166/242 (69%), Gaps = 6/242 (2%)
Strand=Plus/Minus
Query 31771 AGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAG 31830
||| |||| | ||||| || || | ||||| |||| || || || ||||| |
Sbjct 146828258 AGTGAAAATGGGCATTCAGATAGCTCTTCCTTCTGGGTTTTATAGAAGAGGGGCTCCATG 146828199
Query 31831 ATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTA 31890
||||| ||||| | |||||||||||||| || || | ||||| ||||| ||| ||
Sbjct 146828198 GTCTGGCTTGGCTGCAAAACACTTTATCGATGTAGGAACTGGTGTCATAGACGAAGATTA 146828139
Query 31891 TAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAA 31947
||||||| ||||| ||| ||||||||||||| |||||| | || ||| ||
Sbjct 146828138 CTGAGGAAATGTTGGTGCTGTACTGTTTAATTTTGGCAAAGAAAAGT-TTAAAGTCAGAA 146828080
Query 31948 AAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAATAGAAGT 32007
||| | ||| | | || || || ||||| ||| ||| | || |||||||||
Sbjct 146828079 AAA--GTGATCGCATTGCACAGCTCATTTGTGAATGAATTTTTAATCCAGAAATAGAAGA 146828022
Query 32008 AG 32009
||
Sbjct 146828021 AG 146828020
Score = 84.2 bits (92), Expect = 2e-11
Identities = 172/252 (68%), Gaps = 8/252 (3%)
Strand=Plus/Minus
Query 34294 AAAGGAAACAGCAAAAAC---ATACAAATGGTTCAGTATATTTATAAAAACACATCTTCT 34350
|||| ||||| || ||| | ||||||||| || |||||||| ||| ||||| || |
Sbjct 76744854 AAAGAAAACACAAAGAACGACAAACAAATGGTCCAATATATTTACAAATACACAAGTTAT 76744795
Query 34351 TACGGAGATCCTCTAATGTTGATGAAAAGCGCTAGAAGTAACTGCTGGGATAAAACCGCT 34410
| | ||| || || |||||||||||||||||| || || ||| |||| ||
Sbjct 76744794 CCTG---ACCCTATACTGCTGATGAAAAGCGCTAGAAATAGTTGTTGGTCTAAAGATGCA 76744738
Query 34411 GAGTACGGTCTTTACTCAGTATATCAAGGAGGAATACACTATCTaaaaaaaGGAGATAGT 34470
|| ||||| || || || | |||||||| ||| || | || || |||| || ||
Sbjct 76744737 GAATACGGACTCTATTCCATCTATCAAGGGGGATTATTTGAGCTTAAGAAAGATGACAGA 76744678
Query 34471 GTGTTTGTAACAGTTACTAACAAAAACTTTTTAGCGATGGACTACAGAAGTGA-CTATTT 34529
| ||||| | || || || | |||| ||| |||||| | |||| | || |||
Sbjct 76744677 ATTTTTGTTTCTGTAACAAATGAGCACTTGATAGACATGGACCA-TGAAGCCAGCTTTTT 76744619
Query 34530 TGGAGCGTTTTT 34541
|| || |||||
Sbjct 76744618 CGGGGCCTTTTT 76744607
>seq163
Length=189454096
Score = 84.2 bits (92), Expect = 2e-11
Identities = 130/180 (72%), Gaps = 7/180 (4%)
Strand=Plus/Plus
Query 31776 AAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTG 31835
|||| || ||| | || || ||||| ||| | ||| || ||||||| ||| |||
Sbjct 82646747 AAACAGACATTTAGATAGCTCCTCCTTCCACGTGTTGTGGAAGAGTAGCTCC-AGA-CTG 82646804
Query 31836 GATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAG 31895
| ||||| | ||||||||||| || || || | ||||| ||||| ||| || ||||
Sbjct 82646805 GCTTGGCTGCAAAACACTTTATAGATGTAGGAGGTGGTGTCATAGAGGAAGATTACAGAG 82646864
Query 31896 GAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAAAAAGG 31952
|||| ||||| ||| ||||||||||||| |||||| || | ||| ||||||||
Sbjct 82646865 GAAATGTTGGTGCTGTACTGTTTAATTTTGGCAAAGAAAAGTC-TGAAGT-CAAAAAAGG 82646922
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427010039326133
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