Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12]
7,601 sequences; 2,946,843,737 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq1 183 4e-41
seq355 120 4e-22
>seq1
Length=227556264
Score = 183 bits (202), Expect = 4e-41
Identities = 178/229 (78%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||||| ||||| |||| |||||| ||||| || ||||| || |||||||||||
Sbjct 44619717 GTCTGGAACAACTGCTCATCACCCCATTCCGGATGCTCCTGTTTAAGCACATCGCACACT 44619776
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
||||||||||| | |||||||| ||||| |||||||| || ||||| ||||| |||||
Sbjct 44619777 CTGTTGTGTTCTCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 44619836
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
|||| || || ||||| | |||| | || || |||| ||||| |||||||| |
Sbjct 44619837 ACCTCCTGCCCCACAGCAAACCGCAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 44619896
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484
|||| |||||||| | ||| |||||||| || || ||||| ||||
Sbjct 44619897 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 44619945
Score = 172 bits (190), Expect = 8e-38
Identities = 232/323 (72%), Gaps = 0/323 (0%)
Strand=Plus/Plus
Query 8264 TTGAGGAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTA 8323
|||| |||||| ||| ||||| | ||| | | || ||||| ||||| ||||| |
Sbjct 44617676 TTGATGAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCCTTCACGTTATTG 44617735
Query 8324 CAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAG 8383
|||| ||||||||||| | || | |||| ||| || ||||| ||||| || ||
Sbjct 44617736 CAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTGAAAACCCACTTCTCCACCAAAA 44617795
Query 8384 GTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAG 8443
||||| ||||||||||| | || || || || || || |||| || ||||| | ||||
Sbjct 44617796 GTGCTTGGCTTCCAGTAGGCAGGAGAACATATAACATTACCCATAAGTCCTTTCAAGGAG 44617855
Query 8444 AACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCC 8503
|| || || || | || | ||| ||||||| |||||||| | ||||| ||||||||
Sbjct 44617856 AATGGTGCTCCAACTTCTACCATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCT 44617915
Query 8504 ACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCG 8563
|||| | | | |||||||||||||| |||| ||| || || || || | ||
Sbjct 44617916 ACCAGAAGGGCAGGATACAGCTCCACAGCATCGATGTCACCATAGAGTGCTTCCAACTCT 44617975
Query 8564 GCAGCGATCTCCTTTTCTCCTGT 8586
|||| || ||||||||||||||
Sbjct 44617976 GCAGACATTTCCTTTTCTCCTGT 44617998
Score = 132 bits (146), Expect = 7e-26
Identities = 124/158 (78%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | ||
Sbjct 44621185 TCTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 44621244
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
|||||| |||||||| || ||| |||| || |||||||| | ||| ||||||||||||||
Sbjct 44621245 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGTGCCCTGGGGATC 44621304
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806
|| |||| | || | |||||| |||||||||||
Sbjct 44621305 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 44621342
Score = 102 bits (112), Expect = 1e-16
Identities = 115/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 9906 AGTCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTG 9965
|||||||||| || || | |||||||| || || | ||| || ||||| || || |
Sbjct 44621794 AGTCACCTTTCACACCCAAGGGAGTTGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTGG 44621853
Query 9966 CGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATA 10025
||||||||||| || ||||| |||||||||||| ||| | ||||| | |||||
Sbjct 44621854 TATAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAAG 44621913
Query 10026 TGGGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059
| || || ||||||||||||| ||||| ||||
Sbjct 44621914 TTGGTGGACTGTCAATCAAATGTGATCTGGCTGA 44621947
Score = 91.5 bits (100), Expect = 2e-13
Identities = 139/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003
||||| | ||| || ||||| | ||||| ||||| || | ||||||||| || || |
Sbjct 44619124 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCC 44619183
Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061
| | ||| || |||||||||| || ||| | |||| || || | || ||| |
Sbjct 44619184 AGTAATATAGAGTTGTTGTAGATAAACTGTTGA--TAGTTGTATTTCTGGTCATGAATTT 44619241
Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121
||| || |||| || | |||||||||||| | |||||||||| | | ||||
Sbjct 44619242 GAAAGTTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTGTTAAACTCAGCAGCAATAC 44619301
Query 9122 GATTTTGGTACTGGAA 9137
||||||||||||||||
Sbjct 44619302 GATTTTGGTACTGGAA 44619317
>seq355
Length=112612857
Score = 120 bits (132), Expect = 4e-22
Identities = 168/236 (71%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
|||||||||| || |||| || || || || ||||| |||||||||||| |||| |
Sbjct 14860401 TCTTGACGATGTTAAAGCCCATCTCGCCACCAAAAGTGCTCGGCTTCCAGTACTCCGGAG 14860460
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
| |||||| ||| | | ||| || |||||||| || |||||||| | ||| | || |
Sbjct 14860461 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 14860520
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
|||| || ||||| | ||| ||| || |||||| | | | || | ||| | |||||
Sbjct 14860521 TCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAAGAAGCAGCCCAGGGTAGAACTCCA 14860580
Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584
|| || | |||||| || || || | || || || |||||||| ||||||
Sbjct 14860581 ACGCGTCAATGTCTCCATACAGCTCCTCCAACTCCGCTGCCATCTCCTTCTCTCCT 14860636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716808687743040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |