Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq21 221 1e-52 seq13 102 8e-17 >seq21 Length=149150640 Score = 221 bits (244), Expect = 1e-52 Identities = 587/886 (66%), Gaps = 27/886 (3%) Strand=Plus/Plus Query 16661 ACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCT 16720 || || ||||| || || || || | || | || || || ||||| || || | Sbjct 44400566 ACCACTCCCATCCTCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC----- 44400620 Query 16721 AGAGATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACC 16778 || || ||||||||||| || ||||| || || || ||||||| || | | | Sbjct 44400621 AGTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAA--AAC 44400678 Query 16779 CCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGT 16838 ||||||| | || ||| || || ||||| || || ||||| ||||| ||| | Sbjct 44400679 CCAGTTCCGGCATG--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAAT 44400736 Query 16839 TCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCG 16898 |||| || || || || || | || || || | ||| || ||||| ||| | Sbjct 44400737 TCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAG 44400796 Query 16899 CTTCCTTAATAATACTAGCA---ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAA 16955 | | | ||||| || | |||| ||||| | ||| | ||| || || || | Sbjct 44400797 CAT---TGATAATTCTTTCTCTTACTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGA 44400853 Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||||||| || || ||||| || ||||| ||||| |||| || |||||||| || |||| Sbjct 44400854 ACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAA 44400913 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || | || |||||| |||||||||||| | ||| ||||||| || || | |||| Sbjct 44400914 AGGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAG 44400973 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 ||||| || || || | | ||||| | | | ||||| | || || || ||| Sbjct 44400974 AAAAG---ATGCCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTT 44401030 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 ||| | |||||| | | |||| || || || | ||| | ||| ||||||||| | Sbjct 44401031 TGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAA 44401090 Query 17196 TGGCCTTAAA--TAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTA 17252 |||| || || || ||| |||| || | || || |||| || || || || || | Sbjct 44401091 TGGCATTGAAGCGAAATTCCCTTT---CTTTGGGATCTTTTATGTAAGTGTCAATAAGGA 44401147 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 || |||||| | || |||||||| |||||||| || || || || | || || |||| Sbjct 44401148 AACTATACATTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGG 44401207 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGT 17372 |||| | | |||||||| | |||| ||| | | ||| | || || ||||| | Sbjct 44401208 CTTCTGTCACCTGAACTTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCAT 44401267 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAA 17432 | || || || || || ||| | ||| || |||||| | || || || | || | Sbjct 44401268 CACTTGC-GCAAAGAAAACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGA 44401326 Query 17433 CGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| | | || ||||| ||||| || |||| |||||| || ||| Sbjct 44401327 ATTCCCAGTGCCAAATGTCCTTGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTT 44401386 Query 17493 CTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 | ||||| |||||||| | ||| ||||||| ||| | |||||||| Sbjct 44401387 CCGCCTTCTTATACATCTGCCAGATATCATGGTACTCGATGGGGAA 44401432 Score = 129 bits (142), Expect = 6e-25 Identities = 372/568 (65%), Gaps = 11/568 (2%) Strand=Plus/Minus Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018 |||| || || || | || ||||| ||||| || ||||| |||||||| || ||||||| Sbjct 137949068 TCAGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATG 137949009 Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078 | | || |||||| |||| ||||||| | ||| |||||| || || || ||||||| Sbjct 137949008 TGAGGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAA 137948949 Query 17079 AGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT 17138 |||| | | || || ||||| || | ||||| | | || ||||||||| Sbjct 137948948 AGAAGGTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGT 137948889 Query 17139 TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198 | | |||||| | ||||| | || || | ||| | | | ||| ||| | |||| Sbjct 137948888 TCCCAATCCAACACAAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTCCAATGG 137948830 Query 17199 CCTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256 | || | | || ||| |||| | | | | || || || || || || || || Sbjct 137948829 CATTGAAGAGAAATTCCCTTTCT----TTGTTATCTTTAATGTGTGTCAATAAGGAGACT 137948774 Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 | || || || |||||||| || | || || || || || || ||||| || ||| Sbjct 137948773 ATTTATGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTC 137948714 Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 | || |||| ||| ||| ||||| | | ||||| | || || || || | Sbjct 137948713 TGTAATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACA 137948654 Query 17377 CGCGGCGAAAAACGCC--AATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || || || ||| |||||| | | || |||||| |||| || || | || | Sbjct 137948653 TGCTGCAAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCT 137948596 Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 ||||| | | || ||||| | || ||| || | || |||| ||| | || || Sbjct 137948595 TCCCAGTGCCAAATGTCCTTGGACAGATTCACCTCCTGGGCCATCCAGAAAGAAACCTCT 137948536 Query 17495 GCCTTTTTATACATATTCCAAATATCAT 17522 | || |||||| | ||||||||||||| Sbjct 137948535 ACTTTCTTATACGTTTTCCAAATATCAT 137948508 >seq13 Length=108979918 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||||||||||||||| || |||||||| | || |||||| ||||||||||| Sbjct 10124958 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 10124899 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || || |||||||| || || || || | ||||| | Sbjct 10124898 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 10124839 Query 17106 C 17106 | Sbjct 10124838 C 10124838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515703603455040