Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq21 226 3e-54 seq8 107 2e-18 seq13 102 8e-17 >seq21 Length=149150640 Score = 226 bits (250), Expect = 3e-54 Identities = 591/888 (67%), Gaps = 25/888 (3%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || || | || | || || |||||||| || |||| | Sbjct 44400569 ACTCCCATCCTCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT----- 44400623 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019 || ||||| |||||||| ||||| || || || ||||||| ||| | |||| Sbjct 44400624 GAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAAC--CTTGCTAAAACCCA 44400681 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTA 16078 |||||| | ||| ||||| ||||| || || ||||| ||||| ||| |||||| Sbjct 44400682 GTTCCGGCATG--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGT-GCAATTC 44400738 Query 16079 ATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCT 16138 || || || || || || | || | || | |||| ||||||||| ||| || Sbjct 44400739 ATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCA 44400798 Query 16139 TCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATT 16198 | |||| | || | ||| || | ||| | || ||||| || ||||| Sbjct 44400799 TTGATAATTCTTTCTCTTACTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATC 44400858 Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || || || || |||| || || |||| || |||||||| |||||||| || Sbjct 44400859 AGGCAAGCAAAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTG 44400918 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| |||||||||||| | ||||||||||| ||||| | || |||||| Sbjct 44400919 AGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG 44400978 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || || || | | ||||| | | | |||||| | || ||||| |||| | Sbjct 44400979 ---ATGCCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCC 44401035 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 | |||||| | | |||| || || || | || | |||| ||||||||| ||||| Sbjct 44401036 CCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCA 44401095 Query 16439 TTAAA--CAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 || || || ||| | |||| | ||| |||| || || ||||| || ||||| | Sbjct 44401096 TTGAAGCGAAATTCCC--TTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTAT 44401153 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556 ||||| | || |||||||| || ||||| || || || ||| |||| || || || || | Sbjct 44401154 ACATTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTG 44401213 Query 16557 CTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 | || ||||| | | |||| ||| ||| ||| |||| || || || ||||||| Sbjct 44401214 TCACCTGAACTTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTG 44401273 Query 16617 CAGCAA--AAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATG 16674 | |||| ||||| || ||| | | || |||||| | || || | | || | | Sbjct 44401274 C-GCAAAGAAAACCAGAACATGGGAT--ATAAAATATCTCTCCTCGGGCTTCAGGAATTC 44401330 Query 16675 CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGC 16734 ||| | | || ||||| ||||| || || | ||||| ||| ||| | || Sbjct 44401331 CCAGTGCCAAATGTCCTTGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGC 44401390 Query 16735 CTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 ||| |||||||| | ||| ||||||| ||| | ||||| || | ||| Sbjct 44401391 CTTCTTATACATCTGCCAGATATCATGGTACTCGATGGGGAAGATGAC 44401438 Score = 140 bits (154), Expect = 3e-28 Identities = 379/571 (66%), Gaps = 12/571 (2%) Strand=Plus/Minus Query 16195 CATT-AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || || || |||| || |||| || || || ||||| |||||||| ||||||| Sbjct 137949071 CATTCAGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAA 137949012 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCG 16313 | || | || ||||| |||| ||||||| | |||||||||| ||||| || || | Sbjct 137949011 ATGTGAGGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAG 137948952 Query 16314 AAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTT 16373 ||||||| | | || || ||||| || | ||||| | | ||| | |||| Sbjct 137948951 AAAAGAAGGTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTT 137948892 Query 16374 TATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTA 16433 | || | |||||| | ||||| | || || | || | ||| | || ||| | | Sbjct 137948891 TGTTCCCAATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACAGGC-ATTGTTCCAA 137948833 Query 16434 TGGCCTTAAACA--ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAA 16491 |||| || || | | ||| |||| | || |||| | || | || ||||| || | Sbjct 137948832 TGGCATTGAAGAGAAATTCCCTTTCTT-TGT-TATCTTTAATGT--GTGTCAATAAGGAG 137948777 Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGC 16551 ||| | || || || |||||||| ||| | || || || || ||||||||||| | Sbjct 137948776 ACTATTTATGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGT 137948717 Query 16552 CTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTC 16611 || | || || | ||| |||| ||||| ||| ||| |||| || || || || Sbjct 137948716 TTCTGTAATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATC 137948657 Query 16612 ACTTGCAGCAAAAAACGCC--AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGA 16669 || ||| ||||| || ||| ||||| | | || |||||| |||| |||| | || Sbjct 137948656 ACATGCTGCAAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGG 137948599 Query 16670 ATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCC 16729 | ||| | | || ||||| | || ||| || | | | |||| || | || Sbjct 137948598 GCTTCCCAGTGCCAAATGTCCTTGGACAGATTCACCTCCTGGGCCATCCAGAAAGAAACC 137948539 Query 16730 ACTGCCTTTTTATACATTTTCCAAATATCAT 16760 || | || |||||| ||||||||||||||| Sbjct 137948538 TCTACTTTCTTATACGTTTTCCAAATATCAT 137948508 >seq8 Length=144306982 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | |||||||| |||| |||| Sbjct 100933381 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 100933440 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| || || || |||| ||||| | Sbjct 100933441 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 100933500 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 100933501 CCACCACTCTTTCC 100933514 >seq13 Length=108979918 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||||||||||||||| |||||||| || | || ||||| |||||||||||| Sbjct 10124956 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10124897 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 10124896 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGC 10124838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509594225008960