Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq7 111 1e-19 seq15 104 2e-17 seq8 95.1 1e-14 seq21 84.2 2e-11 >seq7 Length=169600520 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||| || ||| | ||||| | ||||| || ||||| ||| ||| ||||| Sbjct 127523591 AAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACC 127523650 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || | | | | || | ||| || || ||||| ||||| | || || Sbjct 127523651 CTCGGATATGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 127523710 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| |||||||| |||||||| ||||| |||||||||||| ||| || | || || Sbjct 127523711 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 127523770 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||||||||| ||||| ||||||||||| | ||||| Sbjct 127523771 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 127523806 >seq15 Length=111343173 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||||| ||||| | | ||| || ||||| ||| ||| | |||||| Sbjct 72888322 AAAATGCAGATTTTCATGAAAACCCTTATGGGGAAGACCATCACCCTCGAGGCTGAACCC 72888263 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| ||| | || | || | || ||||| |||| | || ||| Sbjct 72888262 TCAGATACGATATAAAATGTAGAGGCCGAGATCCAGGATAAGAAAGGAATTCCTCCTGAT 72888203 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||| |||||||| ||||| |||||||||||| ||| || | || ||| Sbjct 72888202 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 72888143 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||| ||||| ||||||||||| | ||||| Sbjct 72888142 AATATTCAAAAGGAGTCTACTCTTCATCTCGTGTT 72888108 >seq8 Length=144306982 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 73239837 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 73239778 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | | ||| | | || | ||| || || || || ||||| | || | | Sbjct 73239777 TCGAATACGATAGAAAATGTAAAGGCCAAGATCCAGGAGAAGGAAGGAATTCCTCCTGCT 73239718 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 | |||||||| |||||||| ||||| |||||||||||| ||| || | || ||| Sbjct 73239717 CTGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 73239658 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||| ||||| ||||||||||| | ||||| Sbjct 73239657 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 73239623 >seq21 Length=149150640 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| | | ||| || || || ||| || | |||||| Sbjct 2777175 AAAATGCAGATTTTCGTGAAAACCCTAAGGGGGAAGACTATCACCCTTGAGATTGAACCC 2777234 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| |||| | || | ||| || || ||||| ||||| | || ||| Sbjct 2777235 TCAGATACGGCAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2777294 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||| |||||||| ||| | ||||||||||| ||| || | || | | Sbjct 2777295 CAGCAAAGACTGATCTTTGCTGGCGAGCAACTGGAAGACGGACGTACTTTGTCTGACTGC 2777354 Query 29139 AATATTCAGAAGGAATCTACTCTTCA 29164 || ||||| ||||| |||||||||| Sbjct 2777355 AACATTCAAAAGGAGCCTACTCTTCA 2777380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426849621608840