Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq2 208 9e-49 seq1 174 2e-38 seq18 159 4e-34 >seq2 Length=204787373 Score = 208 bits (230), Expect = 9e-49 Identities = 601/916 (66%), Gaps = 23/916 (3%) Strand=Plus/Minus Query 176345 AGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATAT 176404 ||| ||| | || ||| | |||||| || ||||| | | || | |||||||| | Sbjct 96294452 AGCCCAGTTCGTGCCCCCGCTGTATTCCCTGGTGTTCATGGTGGGCCTCTTGGGCAACGT 96294393 Query 176405 CTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACT 176464 | |||||||| || |||||| ||||| || | || || | || ||||| | || Sbjct 96294392 GGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACCT 96294333 Query 176465 GTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTA 176524 | | ||| |||| || || ||| |||| || || || || | || || ||||| ||||| Sbjct 96294332 GCTCAACCTGGCCATTTCGGACCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACTA 96294273 Query 176525 TATT--GGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGT 176582 | | ||| ||| | | || ||| | || | ||||||| | ||| ||| Sbjct 96294272 TGTCAGGGAGCGTAAC----TGGGTCTTCAGCCATGGCA-TGTGTAAGGTCCTCTCGGGG 96294218 Query 176583 GTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGG 176642 | | | ||| |||||||| || |||||| ||| ||||| || || | |||||| Sbjct 96294217 TTTTATCACACAGGCTTGTACAGCGAGATCTTTTTCATAATCCTCCTGACGATTGACAGG 96294158 Query 176643 TATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCA 176700 || || || ||||| ||||||| ||| || ||| || || || || | ||| Sbjct 96294157 TACCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAGCC--AGGACTGTCACTTTTGGTG 96294100 Query 176701 TAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCT 176760 | | || | | |||||| ||||||| | | | || ||||||||| | | Sbjct 96294099 TCATCACTAGCATCGTCACCTGGGGCCTGGCAGTGCTAGCAGCTCTTCCTGAATTTATTT 96294040 Query 176761 TTCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATG 176819 | |||| |||| | | || | || || | || |||||| || Sbjct 96294039 TCTATGGGACTGAAGA-GTTGTTTCCAGAGACTCTTTGCAGTGCTATTTACCCACAGGAT 96293981 Query 176820 TCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTG 176879 | | || ||||||| |||| | | ||| || || ||||| | | Sbjct 96293980 ACAGTATATAGCTGGAGGCATTTCCACACTCTGAGAATGACCATCTTGTGTCTCGCTCTC 96293921 Query 176880 CCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCC 176939 ||||||||| ||||||| |||||||| | ||| |||| || ||| ||||| ||||| Sbjct 96293920 CCTCTGCTCGTTATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCCC 96293861 Query 176940 AGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTT 176999 || || || ||||||||||||||| ||||||| ||||||||||||| | | ||| || Sbjct 96293860 AGTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCTGTGTTTTTCATT 96293801 Query 177000 TTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTA-- 177057 || |||||||||||||| | | | |||| | ||||||| | ||| || ||||| Sbjct 96293800 TTCTGGACACCCTACAATGTGGCTATCCTTATCTCTACCTAT----CAATCCGTCTTATT 96293745 Query 177058 ---ACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAG 177114 || || | |||| | ||||| | ||||| || ||||| || | Sbjct 96293744 TGGACTTG-ACTGTGAACGGAGCAAGCATCTGGACCTGTTCGTGCTGGCGACGGAGGTGA 96293686 Query 177115 TAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTA 177174 | |||||| | ||||| ||| | ||||||||||||||||| || || || |||| ||| Sbjct 96293685 TCGCCTACTCCCACTGCTGCGTGAACCCAGTGATCTACGCCTTTGTTGGAGAGAGGTTCC 96293626 Query 177175 GAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCC 177234 | | ||||| |||||||||||||| ||||| ||| |||| |||| ||||||| Sbjct 96293625 GGAAGTACCTGCGCCACTTCTTCCACAGGCACGTGCTCATGCACCTGGGCAAATACATCC 96293566 Query 177235 CCTTCCTGTCTGGTGA 177250 | ||||| || |||| Sbjct 96293565 CATTCCTTCCTAGTGA 96293550 Score = 208 bits (230), Expect = 9e-49 Identities = 601/916 (66%), Gaps = 23/916 (3%) Strand=Plus/Minus Query 9459 AGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATAT 9518 ||| ||| | || ||| | |||||| || ||||| | | || | |||||||| | Sbjct 96294452 AGCCCAGTTCGTGCCCCCGCTGTATTCCCTGGTGTTCATGGTGGGCCTCTTGGGCAACGT 96294393 Query 9519 CTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACT 9578 | |||||||| || |||||| ||||| || | || || | || ||||| | || Sbjct 96294392 GGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACCT 96294333 Query 9579 GTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTA 9638 | | ||| |||| || || ||| |||| || || || || | || || ||||| ||||| Sbjct 96294332 GCTCAACCTGGCCATTTCGGACCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACTA 96294273 Query 9639 TATT--GGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGT 9696 | | ||| ||| | | || ||| | || | ||||||| | ||| ||| Sbjct 96294272 TGTCAGGGAGCGTAAC----TGGGTCTTCAGCCATGGCA-TGTGTAAGGTCCTCTCGGGG 96294218 Query 9697 GTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGG 9756 | | | ||| |||||||| || |||||| ||| ||||| || || | |||||| Sbjct 96294217 TTTTATCACACAGGCTTGTACAGCGAGATCTTTTTCATAATCCTCCTGACGATTGACAGG 96294158 Query 9757 TATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCA 9814 || || || ||||| ||||||| ||| || ||| || || || || | ||| Sbjct 96294157 TACCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAGCC--AGGACTGTCACTTTTGGTG 96294100 Query 9815 TAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCT 9874 | | || | | |||||| ||||||| | | | || ||||||||| | | Sbjct 96294099 TCATCACTAGCATCGTCACCTGGGGCCTGGCAGTGCTAGCAGCTCTTCCTGAATTTATTT 96294040 Query 9875 TTCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATG 9933 | |||| |||| | | || | || || | || |||||| || Sbjct 96294039 TCTATGGGACTGAAGA-GTTGTTTCCAGAGACTCTTTGCAGTGCTATTTACCCACAGGAT 96293981 Query 9934 TCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTG 9993 | | || ||||||| |||| | | ||| || || ||||| | | Sbjct 96293980 ACAGTATATAGCTGGAGGCATTTCCACACTCTGAGAATGACCATCTTGTGTCTCGCTCTC 96293921 Query 9994 CCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCC 10053 ||||||||| ||||||| |||||||| | ||| |||| || ||| ||||| ||||| Sbjct 96293920 CCTCTGCTCGTTATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCCC 96293861 Query 10054 AGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTT 10113 || || || ||||||||||||||| ||||||| ||||||||||||| | | ||| || Sbjct 96293860 AGTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCTGTGTTTTTCATT 96293801 Query 10114 TTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTA-- 10171 || |||||||||||||| | | | |||| | ||||||| | ||| || ||||| Sbjct 96293800 TTCTGGACACCCTACAATGTGGCTATCCTTATCTCTACCTAT----CAATCCGTCTTATT 96293745 Query 10172 ---ACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAG 10228 || || | |||| | ||||| | ||||| || ||||| || | Sbjct 96293744 TGGACTTG-ACTGTGAACGGAGCAAGCATCTGGACCTGTTCGTGCTGGCGACGGAGGTGA 96293686 Query 10229 TAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTA 10288 | |||||| | ||||| ||| | ||||||||||||||||| || || || |||| ||| Sbjct 96293685 TCGCCTACTCCCACTGCTGCGTGAACCCAGTGATCTACGCCTTTGTTGGAGAGAGGTTCC 96293626 Query 10289 GAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCC 10348 | | ||||| |||||||||||||| ||||| ||| |||| |||| ||||||| Sbjct 96293625 GGAAGTACCTGCGCCACTTCTTCCACAGGCACGTGCTCATGCACCTGGGCAAATACATCC 96293566 Query 10349 CCTTCCTGTCTGGTGA 10364 | ||||| || |||| Sbjct 96293565 CATTCCTTCCTAGTGA 96293550 Score = 98.7 bits (108), Expect = 1e-15 Identities = 222/327 (68%), Gaps = 15/327 (5%) Strand=Plus/Plus Query 9472 CCCGCCCTGTATCTGCTTG-TGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGT--- 9527 ||| | ||||| || |||| | ||| || |||| || |||| || || | ||||| Sbjct 96355414 CCCCCTCTGTA-CTCCTTGGTATTTGTCATTGGCGTGGTGGGAAACCTCCTGGTGGTCCT 96355472 Query 9528 GATTATTGT-CATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACT 9586 | | |||| || ||||| || | |||||||| | || ||||| | || | ||| Sbjct 96355473 GGTCCTTGTGCA----ATACAAGAGGCTCAAAAACATGACCAACATCTACCTCCTGAACC 96355528 Query 9587 TGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATAT-TGGA 9645 |||| || |||||| |||| || || || || |||| || ||| |||| | | || Sbjct 96355529 TGGCCATTTCTGACCTGCTCTTCCTGTTCACACTGCCCTTCCTGATCTACTACAAGTCGA 96355588 Query 9646 ATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTAC 9705 | |||| |||| ||||||| | || ||||||| | ||| || | | |||| Sbjct 96355589 CAG----ATGACTGGATTTTTGGTGATGCCATGTGTAAGATCCTCTCTGGGTTTTATTAC 96355644 Query 9706 ATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCT 9765 | |||||||| || |||||| |||||||||||| || | |||||||| || || Sbjct 96355645 ACAGGCTTGTACAGCGAGATCTTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCC 96355704 Query 9766 GTTGTCTATGCTGTAACTGCTTTGAGG 9792 | ||| |||| || ||| |||||| Sbjct 96355705 ATCGTCCATGCCGTGTTTGCCTTGAGG 96355731 Score = 98.7 bits (108), Expect = 1e-15 Identities = 222/327 (68%), Gaps = 15/327 (5%) Strand=Plus/Plus Query 176358 CCCGCCCTGTATCTGCTTG-TGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGT--- 176413 ||| | ||||| || |||| | ||| || |||| || |||| || || | ||||| Sbjct 96355414 CCCCCTCTGTA-CTCCTTGGTATTTGTCATTGGCGTGGTGGGAAACCTCCTGGTGGTCCT 96355472 Query 176414 GATTATTGT-CATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACT 176472 | | |||| || ||||| || | |||||||| | || ||||| | || | ||| Sbjct 96355473 GGTCCTTGTGCA----ATACAAGAGGCTCAAAAACATGACCAACATCTACCTCCTGAACC 96355528 Query 176473 TGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATAT-TGGA 176531 |||| || |||||| |||| || || || || |||| || ||| |||| | | || Sbjct 96355529 TGGCCATTTCTGACCTGCTCTTCCTGTTCACACTGCCCTTCCTGATCTACTACAAGTCGA 96355588 Query 176532 ATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTAC 176591 | |||| |||| ||||||| | || ||||||| | ||| || | | |||| Sbjct 96355589 CAG----ATGACTGGATTTTTGGTGATGCCATGTGTAAGATCCTCTCTGGGTTTTATTAC 96355644 Query 176592 ATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCT 176651 | |||||||| || |||||| |||||||||||| || | |||||||| || || Sbjct 96355645 ACAGGCTTGTACAGCGAGATCTTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCC 96355704 Query 176652 GTTGTCTATGCTGTAACTGCTTTGAGG 176678 | ||| |||| || ||| |||||| Sbjct 96355705 ATCGTCCATGCCGTGTTTGCCTTGAGG 96355731 >seq1 Length=225584828 Score = 174 bits (192), Expect = 2e-38 Identities = 133/157 (85%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| |||||||| ||||||||| || || || ||||||||||||||||| | ||| Sbjct 159841533 CAGCGCCGCAGCCTCAGCCTGAGGGTCTTCAGATTCTCCCCCAGGGAGTTCACATGCTCC 159841474 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || ||| | | ||||||||| || |||||||||||||||||||||||||||||| Sbjct 159841473 TTGAT---GTCTGGGTCGTGGTTCTCAGCTTGGGGCATCACCTCCTCCAGGTAAAACTGG 159841417 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||||||||| ||| ||||| ||||||||||||| Sbjct 159841416 ATCATCTCAGACAAGGCTTGGCAACCCAGGTAACCCT 159841380 Score = 120 bits (132), Expect = 4e-22 Identities = 84/96 (88%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 137921 CTCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACT 137980 ||||||||| ||||| | ||||||||||| ||||||||||| |||||||||||||||| Sbjct 159843867 CTCAGTTTTGTATCTTCATTGTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACT 159843808 Query 137981 CGCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 | |||||||| |||||||| ||||| || ||||||| Sbjct 159843807 CACTCATGGCTTTGTAGACGCCTTTCTCTTGGAGCT 159843772 >seq18 Length=70235451 Score = 159 bits (176), Expect = 4e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| || | ||||||||| ||||||| ||||||||| |||||||| ||| Sbjct 8839046 AGGCCCGTGATGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 8839105 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || |||||||| ||||| | |||||||||||||||||| ||||| | | | || Sbjct 8839106 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 8839165 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||||||||| || ||||| || ||||| ||||| Sbjct 8839166 ACATAGAACTGGCAGAGAGCATGGCATGGAGGCAGTGCCAT 8839206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587976657661120