Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq11 131 1e-25 seq16 113 4e-20 seq5 111 1e-19 seq3 111 1e-19 seq7 102 7e-17 seq8 96.9 3e-15 seq2 87.8 2e-12 >seq11 Length=133663169 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | ||||||||||| || |||||||| || || ||||| ||| || Sbjct 125065057 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTC 125065116 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || |||| | | |||||| || ||||| ||||| ||||||||| Sbjct 125065117 CAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTG 125065176 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| ||| || | |||| |||||| || ||||||||||| ||| | || || Sbjct 125065177 GATCTTTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTT 125065236 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || || || |||||||| Sbjct 125065237 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 125065266 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || |||||||| || |||||||| || || |||||| ||| || Sbjct 125064373 CACGAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 125064432 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| |||||||| |||| | | |||||| || ||||| |||||||||||||| Sbjct 125064433 CAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 125064492 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | ||| | ||||| || ||| ||||||| ||| | || || Sbjct 125064493 GATCTTTGCCTTGACATTTTCAATAGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTT 125064552 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || || || |||||||| Sbjct 125064553 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 125064582 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || |||||||| || |||||||| || || |||||| ||| || Sbjct 125064601 CACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 125064660 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| |||||||| |||| | | |||||| || ||||| |||||||||||||| Sbjct 125064661 CAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 125064720 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | ||| | ||||| || ||| ||||| | ||| | || || Sbjct 125064721 GATCTTTGCCTTGACATTTTCAATAGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTT 125064780 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || || || |||||||| Sbjct 125064781 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 125064810 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || |||||||| ||||||||||| || || |||||| ||| || Sbjct 125064145 CACGAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 125064204 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| ||||| |||| | | |||||| || ||||| ||||| ||||| || Sbjct 125064205 CAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTG 125064264 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | || | |||||| || ||| ||||||| || | || || Sbjct 125064265 GATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCGAGAGTGATGGTCTT 125064324 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || || || || |||||||| Sbjct 125064325 GCCAGTGAGGGTCTTCACGAAGATCTGCAT 125064354 >seq16 Length=77216781 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || |||||||| || | |||||| ||| || ||||| || || Sbjct 16306443 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 16306502 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||| | |||||| ||||| || ||||| ||||| || ||||| || Sbjct 16306503 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTC 16306562 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| |||||| || ||| ||||| | ||| | || ||||||||||| || Sbjct 16306563 ACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTC 16306622 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 16306623 TTCACGAAGATCTGCAT 16306639 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || | |||||| ||| || Sbjct 16305975 ACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 16306034 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| ||||| || ||||| || || ||| Sbjct 16306035 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCTTGG 16306094 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| |||||| || ||| ||||| | ||| | || ||| Sbjct 16306095 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 16306154 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| ||||| || || |||||||| Sbjct 16306155 CCGGTCAGGGTTTTCACGAAGATCTGCAT 16306183 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || | |||||| ||| || Sbjct 16306203 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 16306262 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| |||||||| ||||| || || || Sbjct 16306263 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGG 16306322 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| |||||| || ||| || || | ||| | || ||| Sbjct 16306323 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 16306382 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 16306383 CCGGTCAGGGTCTTCACGAAGATCTGCAT 16306411 >seq5 Length=190429646 Score = 111 bits (122), Expect = 1e-19 Identities = 155/216 (72%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--A 118583 |||||||| ||| | || ||||||| | |||||||| || | || | ||| | Sbjct 87219641 CAACACCAGGTGCAGGGTGGACTCTT---GGATGTTGTAGTCTGAGAGAGAGTGCGGCCA 87219585 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || || |||||||| | || | || ||||||||||| || || || || ||||||||| Sbjct 87219584 TCTTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 87219525 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 ||| |||||| ||| || | || | |||||| || ||||||||| | ||| | Sbjct 87219524 TCTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 87219465 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||| | || || || ||||| ||||||||| Sbjct 87219464 GTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATG 87219429 >seq3 Length=185818997 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 118545 GACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCG 118604 |||||||| || |||||| | || | |||||| |||||| |||||||| || || Sbjct 82519720 GACTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCA 82519661 Query 118605 TAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACC 118664 | || ||||||||||| || | || |||||||||||| || |||||| || || Sbjct 82519660 AATATCAGACGCTGCTGGTCAAGTGGGATGCCCTCCTTGGCTTGAATTTTGGCCTTGACA 82519601 Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724 | || |||||| || ||||||||||| ||| | || ||||| || || || || Sbjct 82519600 TTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTC 82519541 Query 118725 ACAAAAATCTGCAT 118738 ||||| |||||||| Sbjct 82519540 ACAAAGATCTGCAT 82519527 >seq7 Length=169600520 Score = 102 bits (112), Expect = 7e-17 Identities = 154/215 (72%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| || | || |||||||| || |||||||| | | |||||| ||| Sbjct 120107777 CAGCACCAGGTTTAGGGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCATC 120107718 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATC-GGGAGG-TATGCCCTCCTTG 118643 ||| |||||||| ||||| || ||||||||||| || || ||| ||| ||||||||| Sbjct 120107717 CTCCAGCTGTTTCCCAGCAAGTATCAGACGCTGCTGGTCAGGTAGGATAT-CCCTCCTTG 120107659 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 ||| |||||| ||| || | | | |||||| || ||| | ||| | ||| | Sbjct 120107658 TCTTGAATTTTGGCTTTGACATTCTAAATGGTGTCACTGGGCTCAATCTCAAGGGTGATG 120107599 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || ||||| |||||||| Sbjct 120107598 GTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 120107564 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | |||||||| |||||||| ||||| || Sbjct 127523822 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 127523763 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || || || || ||||| |||| || | |||||||| ||||| Sbjct 127523762 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 127523703 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | | |||| | || || Sbjct 127523702 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAAC 127523643 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||| | || || || || || ||||| || ||||||||||| Sbjct 127523642 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 127523595 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| || | || |||||||| || ||||| ||||| | |||| | |||||| Sbjct 82646644 CACCACCTGCAGGGTGGACTCTTTGTGGATGTTATAATCTGAAAGAGTGTGGCCATCCTC 82646585 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||| || | | || ||| ||||||| || || || |||||||||||||| Sbjct 82646584 CAACTGTTTGCCCACAAATATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCATG 82646525 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||| || | ||| |||||| || || |||||| | ||| | ||| | Sbjct 82646524 GATCTTGGCTTTGACATTTTCACTGGTGTCACTGGGCTGGACCTCAAAGGTGATGGTTCT 82646465 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || || |||||| | ||||||||| || Sbjct 82646464 TCCTGTGAGGGTCTTTACAGAGATCTGCATGTCT 82646431 >seq8 Length=144306982 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || |||||||| || |||||||| || | ||||| ||| Sbjct 122436258 CAGCACCATGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCAGCCATC 122436199 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||||||| || || || ||| ||||||| || || || |||||||||||||| Sbjct 122436198 CTCCAGCTGTTTGCCCGCAAGTATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTC 122436139 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| || || | || |||||| || ||||| ||| | |||| Sbjct 122436138 TTGAATTTTGGCGTTGACATTCTCAGTGGTGTCACTGGGCTCGATCTCAAAGGTC----- 122436084 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || ||||| ||||||| Sbjct 122436083 -TTGCCTGTGAGGGTCTTCACAAAGGTCTGCAT 122436052 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | |||||||| |||||||| ||||| || Sbjct 73239607 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 73239666 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || || || || ||||| |||| || | ||| || | ||||| Sbjct 73239667 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAGAGCAGGAGG 73239726 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | || | || | || || Sbjct 73239727 AATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTATTCGAGGGTTCAAC 73239786 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||| | || || || || || ||||| || ||||||||||| Sbjct 73239787 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 73239834 >seq2 Length=204787373 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||||| |||| ||| || | ||| || ||| Sbjct 184232502 CAGCACCAGGTGCAGGGTGGACTCTTCCCAGATGTCGTAGTCTGAGAGAGTTCGGCCATC 184232443 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||||||| || || || ||| ||||||| || || || || ||||||||||| Sbjct 184232442 CTCCAGCTGTTTGCCGGCAAGTATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 184232383 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| ||| || | || |||||| || || |||||| | || | || Sbjct 184232382 TTGAATTTTGGCTTTGACATCCTCATTGGTGTCACTGGGCTTGACCTCAAGAGTGATGGT 184232323 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || ||||| |||||||| Sbjct 184232322 CTTGCCCGTAAGGGTCTTCACAAAGATCTGCAT 184232290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432324955367776