Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5 105 8e-18 seq4 105 8e-18 seq16 100 3e-16 seq11 100 3e-16 seq1 100 3e-16 seq113431 98.7 1e-15 seq12 98.7 1e-15 seq7 98.7 1e-15 seq119200 89.7 6e-13 seq15 86.0 7e-12 seq3 84.2 2e-11 >seq5 Length=190429646 Score = 105 bits (116), Expect = 8e-18 Identities = 161/225 (72%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATC--AGCCAGAGTCCGCT 43026 |||||||||| |||| ||| ||| ||| || ||||| || || ||||| || Sbjct 87219643 CGCAACACCAGGTGCAGGGTGGACTC---TTGGATGTTGTAGTCTGAGAGAGAGTGCGGC 87219587 Query 43027 CGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCT 43086 | || || ||||| || | || ||||| || ||||||||||| | || | | ||||| Sbjct 87219586 CATCTTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCT 87219527 Query 43087 TGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 |||| ||| |||| | ||||| || | | ||||| || | || || || | ||| Sbjct 87219526 TGTCT-TGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTG 87219468 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190 ||||||||||||| || ||||| |||||||| ||||| ||| || Sbjct 87219467 ATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTTTGCG 87219423 >seq4 Length=172585720 Score = 105 bits (116), Expect = 8e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 |||||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 27903082 TTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 27903023 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 27903022 ACTATACTAACGAGGA 27903007 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 27985169 TTGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 27985228 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 27985229 ACTATACTAACGAGGA 27985244 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 27876930 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 27876871 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 27876870 TACTAACGAGGA 27876859 >seq16 Length=77216781 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||| |||| ||||| || | || || |||||||| || || || Sbjct 16306448 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 16306507 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||||| || | || ||||| ||| |||||| || | | Sbjct 16306508 GATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACATT 16306567 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 16306568 TTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 16306627 Query 43172 AAAGATTTGCATTTTTAC 43189 ||||| |||||||| || Sbjct 16306628 GAAGATCTGCATTTTGAC 16306645 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | |||| |||| |||| || |||||| || || ||||| |||| Sbjct 16306185 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 16306244 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| || || || ||||| | ||||||||||| || Sbjct 16306245 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 16306304 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || || || ||| ||| || || | | | | ||||| || | ||||| Sbjct 16306305 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 16306364 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 16306365 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16306411 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| | | |||||| |||||| ||||||||||||||||||||| ||||||||||| Sbjct 8236034 TTCTCCCCCTCGGGGAATGGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 8236093 Query 60124 TATACTACCGAGGATTGA 60141 | ||||| |||||| ||| Sbjct 8236094 TGTACTAACGAGGAGTGA 8236111 Score = 82.4 bits (90), Expect = 9e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||| |||| || |||||| || || ||||| |||| ||||| || | Sbjct 16305969 CGCAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 16306028 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || ||||| | ||||||||||| || | || || || Sbjct 16306029 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTA 16306088 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || ||| || || | | | | ||||| || | ||||| || | |||||| Sbjct 16306089 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 16306148 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || || || || ||||| ||||| Sbjct 16306149 GTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 16306183 >seq11 Length=133663169 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | || | ||| | |||| ||| ||| || || || ||||| |||| | Sbjct 125065268 CCACCTCTGAGGCGGAGCACGAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 125065327 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || |||||||| || || || || || | ||||||||||| || Sbjct 125065328 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 125065387 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||| || ||| ||| |||| || | | ||||| || | || || Sbjct 125065388 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 125065447 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | |||||||| ||||| || || ||||| || ||||| |||||| Sbjct 125065448 TCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 125065495 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 95885970 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 95885911 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 95885910 TACTAACGAGGA 95885899 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 125080038 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 125080097 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 125080098 TACTAACGAGGA 125080109 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 125084942 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 125085001 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 125085002 TACTAACGAGGA 125085013 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 98326770 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 98326711 Query 60125 ATACTACCGAGGATTG 60140 |||||| |||||| || Sbjct 98326710 ATACTAACGAGGAGTG 98326695 >seq1 Length=225584828 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 136319051 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 136318992 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 136318991 ATACTAACGAGGA 136318979 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/70 (90%), Gaps = 2/70 (3%) Strand=Plus/Plus Query 60068 CCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATA 60127 ||||| | ||||||||||||| |||||||||||||||||| || ||||||||||||||| Sbjct 136165747 CCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGG-GGGGATACTCACCACTATA 136165805 Query 60128 CTACCGAGGA 60137 ||| |||||| Sbjct 136165806 CTA-CGAGGA 136165814 Score = 87.8 bits (96), Expect = 2e-12 Identities = 58/63 (92%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGC-GGACATACTCACCACTATACTACCGA 60134 ||||||||||||| ||||||||||||||||||| || |||||||||||||||||| ||| Sbjct 136264317 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGGATACTCACCACTATACTAACGA 136264376 Query 60135 GGA 60137 ||| Sbjct 136264377 GGA 136264379 >seq113431 Length=761 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 548 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 607 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 608 TACTAACGAGGA 619 >seq12 Length=125506784 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 32726891 CTCCCCGTCGGGGAATCGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 32726832 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 32726831 TACTAACGAGGA 32726820 >seq7 Length=169600520 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 96102437 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 96102378 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 96102377 TACTAACGAGGA 96102366 Score = 82.4 bits (90), Expect = 9e-11 Identities = 137/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||| | | ||||| || | || || ||||| || ||||| | Sbjct 120107756 CTCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTCCCAGCAAG 120107697 Query 43052 TATGAGTCGCTGCTGGTC-GGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGC 43109 ||| || ||||||||||| || || | |||||||| | ||| |||| | ||||| Sbjct 120107696 TATCAGACGCTGCTGGTCAGGTAGGATATCCCTCCTTGT-CTTGAATTTTGGCTTTGACA 120107638 Query 43110 GTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 || | ||||| || | || | || | |||||||| |||||||| || ||||| Sbjct 120107637 TTCTAAATGGTGTCACTGGGCTCAATCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTC 120107578 Query 43170 ACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 120107577 ACAAAGATCTGCAT 120107564 >seq119200 Length=2385 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 60067 TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTAT 60126 ||| |||| |||||| |||||| ||||||| ||||||||||| | |||||||||||||| Sbjct 965 TCCGCGGCCGGGAATTGAACCCGGGTCTCCTGCGTGACAGGCAGGAATACTCACCACTAT 1024 Query 60127 ACTACCGAGGA-TTGA 60141 ||||||| ||| |||| Sbjct 1025 ACTACCGCGGAGTTGA 1040 >seq15 Length=111343173 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 |||||||||||||||||||||| | |||||||||| ||| |||||||||||||| |||| Sbjct 91172202 GGGAATCGAACCCTGGTCTCCCACATGACAGGCGGGGATATTCACCACTATACTAACGAG 91172261 Query 60136 GA 60137 || Sbjct 91172262 GA 91172263 >seq3 Length=185818997 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||| | || | ||||| || | || || ||||| || || || || Sbjct 82519718 CTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAA 82519659 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||| || ||||||||||| || | || ||||||| | ||| |||| | |||| Sbjct 82519658 TATCAGACGCTGCTGGTCAAGTGGGATGCCCTCCTTG-GCTTGAATTTTGGCCTTGACAT 82519600 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | ||||| || | || || |||| |||||||| ||||| || || ||||| | Sbjct 82519599 TCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTCA 82519540 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 82519539 CAAAGATCTGCAT 82519527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569782443979840