Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq7 102 1e-16 seq237451 98.7 1e-15 seq128769 98.7 1e-15 seq128457 98.7 1e-15 seq114127 98.7 1e-15 seq15 98.7 1e-15 seq8 89.7 8e-13 seq17 87.8 3e-12 >seq7 Length=169600520 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 127523821 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 127523763 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 127523762 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 127523703 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 127523702 AATTCCTTCCTTATCCTG 127523685 >seq237451 Length=7360 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 10437 GGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATT 10496 || ||||||| |||| ||||||| | || | || ||| ||| | ||||||||| | Sbjct 590 GGGTGTTATGGAAGAGTAGCTCCACGGTCAGGCTTGGCTGCAAAACACTTTATTGATGTA 531 Query 10497 GGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCAT 10556 |||||||| || || || |||||||||||||||||||| || || || | |||||| | Sbjct 530 GGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTTT 471 Query 10557 TCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAA 10616 || ||| | ||| | | || | || ||| |||| | ||| | || || ||| Sbjct 470 GGCAAAGAAAAGTTTGAAGTCAAAAAGGGTGATCGAATTGCACAACTCATTTGCGAACGG 411 Query 10617 ATTTTATATCCTAAAAT 10633 ||||| ||||| |||| Sbjct 410 ATTTTTTATCCAGAAAT 394 >seq128769 Length=6953 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 10437 GGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATT 10496 || ||||||| |||| ||||||| | || | || ||| ||| | ||||||||| | Sbjct 6364 GGGTGTTATGGAAGAGTAGCTCCACGGTCAGGCTTGGCTGCAAAACACTTTATTGATGTA 6423 Query 10497 GGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCAT 10556 |||||||| || || || |||||||||||||||||||| || || || | |||||| | Sbjct 6424 GGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTTT 6483 Query 10557 TCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAA 10616 || ||| | ||| | | || | || ||| |||| | ||| | || || ||| Sbjct 6484 GGCAAAGAAAAGTTTGAAGTCAAAAAGGGTGATCGAATTGCACAACTCATTTGCGAACGG 6543 Query 10617 ATTTTATATCCTAAAAT 10633 ||||| ||||| |||| Sbjct 6544 ATTTTTTATCCAGAAAT 6560 >seq128457 Length=7192 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 10437 GGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATT 10496 || ||||||| |||| ||||||| | || | || ||| ||| | ||||||||| | Sbjct 590 GGGTGTTATGGAAGAGTAGCTCCACGGTCAGGCTTGGCTGCAAAACACTTTATTGATGTA 531 Query 10497 GGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCAT 10556 |||||||| || || || |||||||||||||||||||| || || || | |||||| | Sbjct 530 GGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTTT 471 Query 10557 TCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAA 10616 || ||| | ||| | | || | || ||| |||| | ||| | || || ||| Sbjct 470 GGCAAAGAAAAGTTTGAAGTCAAAAAGGGTGATCGAATTGCACAACTCATTTGCGAACGG 411 Query 10617 ATTTTATATCCTAAAAT 10633 ||||| ||||| |||| Sbjct 410 ATTTTTTATCCAGAAAT 394 >seq114127 Length=15708 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 10437 GGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATT 10496 || ||||||| |||| ||||||| || || | || ||| ||| | ||||||||| | Sbjct 9797 GGGTGTTATGGAAGAGTAGCTCCAAGGTCAGGCTTGGCTGCAAAACACTTTATTGATGTA 9738 Query 10497 GGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCAT 10556 |||||||| || || || |||||||||||||||||||| || || || | |||||| | Sbjct 9737 GGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTTT 9678 Query 10557 TCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAA 10616 || ||| | ||| | | || | || ||| |||| | ||| | || || ||| Sbjct 9677 GGCAAAGAAAAGTTTGAAGTCAAAAAGGGTGATCGAATTGCACAACTCATTTGCGAACGG 9618 Query 10617 ATTTTATATCCTAAAAT 10633 ||||| ||| | |||| Sbjct 9617 ATTTTTTATGCAGAAAT 9601 >seq15 Length=111343173 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 72888093 CCACCACGAAGTCTCAACACGAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 72888151 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 72888152 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 72888211 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 72888212 AATTCCTTTCTTATCCTG 72888229 >seq8 Length=144306982 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 73239608 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 73239666 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| ||||||| || | ||||| Sbjct 73239667 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAGAGCAGGAGG 73239726 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| || || || Sbjct 73239727 AATTCCTTCCTTCTCCTG 73239744 >seq17 Length=95684472 Score = 87.8 bits (96), Expect = 3e-12 Identities = 106/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 65241139 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 65241081 Query 146110 AAGAGTTC-TGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||| | ||| ||| || | ||| || |||||||| ||| ||||||||| | |||| Sbjct 65241080 CAAAGTCCATGC-ATCTTCCAGTTGCTTGCCAGCAAAGATCCCCCTTTGCTGAGCAGGAG 65241022 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| ||||| || Sbjct 65241021 GAATTCCTTCCTTATCCTG 65241003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740880115189760