Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq21 214 2e-50 seq8 116 3e-21 seq13 102 8e-17 >seq21 Length=149150640 Score = 214 bits (236), Expect = 2e-50 Identities = 607/919 (66%), Gaps = 23/919 (3%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| ||| | | ||| ||| ||| || ||| |||| ||| ||| Sbjct 44400519 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGATTCGACACCACTCCCATCC 44400578 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | ||||| || | |||||||| |||||||| || || |||| | ||||||||| | Sbjct 44400579 TCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCT 44400633 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC---ATCCCAATTCCAACA 16061 ||||||| ||||| || || | | || | | | | || | |||| |||| || Sbjct 44400634 CCATAAAGTCAAATGGGTTCTCT--ACTCT-GAAAACCTTGCTAAAACCCAGTTCCGGCA 44400690 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 ||| || |||||||| || || || || ||||||| | || ||||| || || | Sbjct 44400691 TG--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGA 44400748 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 || ||||| | || || || | || | | |||||| ||| || | || ||| Sbjct 44400749 GCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTC 44400808 Query 16182 TATCTCTTACTACACTATTT-AACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCA 16240 | ||||||||| | || | || || || || | ||| || ||||| | |||||| Sbjct 44400809 TTTCTCTTACT-CTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCA 44400867 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 |||||||| || || || || || | ||| || | || || ||||| || || || ||| Sbjct 44400868 AAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGC 44400927 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || ||||||||||| || | ||| ||||| | ||||| ||||||||||| || ||| Sbjct 44400928 ATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATGCCT 44400984 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT-TCTAtttttactttctatcca 16419 || |||| ||||| | || | || || || || || || ||| | | ||||| Sbjct 44400985 TCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTC-CCCAATCCA 44401043 Query 16420 ttttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAA 16479 | ||||||| ||| || | || ||||| ||| | || || ||||| || Sbjct 44401044 GTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCG 44401103 Query 16480 ATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGA 16539 | | | |||||||| |||| || ||||| || || || |||||||||||| | || Sbjct 44401104 AAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGA 44401163 Query 16540 ATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTAC 16599 ||| || || ||||| || || || || ||| | || || | ||||| | | || || Sbjct 44401164 ATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAAC 44401223 Query 16600 TTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAA 16659 ||| | | | | || | |||||| | || ||||| ||||| || || ||||| || Sbjct 44401224 TTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAA 44401282 Query 16660 CGCAAGTATGTGTTTAATAAAAtttttttCGT-TATCTGAAAGTTTTAACCAGTCAGAAA 16718 | || | || ||||||| | | || | || | | || ||||| ||| Sbjct 44401283 AACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGAATT-CCCAGTGCCAAA 44401341 Query 16719 AATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACA 16778 || || || || ||||| || | ||||| || ||||| | ||||| ||||||| Sbjct 44401342 TGTCCTTGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACA 44401401 Query 16779 TTTTCCATATGTCTTCGTA 16797 | | ||| || || | ||| Sbjct 44401402 TCTGCCAGATATCATGGTA 44401420 Score = 118 bits (130), Expect = 1e-21 Identities = 364/558 (65%), Gaps = 5/558 (1%) Strand=Plus/Minus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 |||||||| | ||| || || || || || || || || | || || |||||||| || Sbjct 137949063 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 137949004 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| |||||| |||| || | ||| ||||| ||||| |||||||||||||| Sbjct 137949003 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 137948944 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 | | ||| ||| |||||| || | | || || || | || | ||| | | Sbjct 137948943 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 137948884 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 ||||| ||||| ||| || | || |||||| ||||| | || ||||| Sbjct 137948883 ATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACAGGCATTGTTC-CAATGGCATTG 137948825 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 || | | | | |||||||| ||||| ||| | || || || || | ||||| || Sbjct 137948824 AAGAGAAATTCCCTTTCTTTGTTATCTTTAATGT--GTGTCAATAAGGAGACTATTTATG 137948767 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594 || ||||| || || || | || || || || ||||| ||||| | ||| | || Sbjct 137948766 TCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATC 137948707 Query 16595 TGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCA 16654 || | ||| ||| ||| | |||||||| | ||||| ||||| | |||||| Sbjct 137948706 TGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGCA 137948647 Query 16655 AAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTA-TCTGAAAGTTTTAACCAGTC 16713 || || || || || | ||||||| | |||| | | || | | || ||||| Sbjct 137948646 AAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTCAGGCTTCAGGGCTT-CCCAGTG 137948588 Query 16714 AGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTT 16773 ||| || || || | || ||||| | | |||| |||||| | | | || || Sbjct 137948587 CCAAATGTCCTTGGACAGATTCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTTTCTT 137948528 Query 16774 ATACATTTTCCATATGTC 16791 |||| ||||||| || || Sbjct 137948527 ATACGTTTTCCAAATATC 137948510 >seq8 Length=144306982 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || ||||||||| | | | || |||||||| | Sbjct 100922387 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCTGCCATAACTGCAAAAC 100922446 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || |||||||||||||||||||||||||| ||||| |||| Sbjct 100922447 GCTGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 100922506 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||||||||||| || Sbjct 100922507 CCATAAAATCAAAAGGATTTTCTG 100922530 >seq13 Length=108979918 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 10124956 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10124897 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| ||||| |||||||| || ||||| ||||||||||| || Sbjct 10124896 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCT 10124837 Query 16379 ACCAATCGCTCACC 16392 || | || ||||| Sbjct 10124836 ACAACACGTTCACC 10124823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460865873540800