Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq21 239 4e-58 seq13 111 2e-19 seq244122 98.7 1e-15 >seq21 Length=149150640 Score = 239 bits (264), Expect = 4e-58 Identities = 523/775 (67%), Gaps = 15/775 (2%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | || || | || ||||| | Sbjct 44400521 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGATTCGACACCACTCCCATCCT 44400579 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || ||||||||||| || ||| |||||| ||||| || Sbjct 44400580 CTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAAATATTCTC 44400634 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 |||||| |||||||| || | | || || || | |||| ||||| | Sbjct 44400635 CATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCGGCATG-- 44400692 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 ||| || || | |||||||| ||||| ||||| | |||||||| || || || || Sbjct 44400693 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 44400752 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA- 14153 ||||| | | || | ||||| | |||||| ||||| | | | || | Sbjct 44400753 CACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTCTTTC 44400812 Query 14154 TCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 14213 || || | | || | | || | | || || || || || | || ||||||| Sbjct 44400813 TCTTACTC-TCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAAT 44400871 Query 14214 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 14273 |||| || | |||||||||| |||||||||||| || ||||| || | || ||||||| Sbjct 44400872 CACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCA 44400931 Query 14274 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 14333 ||||||||| || | ||| ||||| | || || | || ||||||| | || || Sbjct 44400932 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCCG 44400988 Query 14334 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14393 |||||||||| ||| | ||||| ||| | | ||| ||||| | ||||| | Sbjct 44400989 CTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATCCAGTGCA 44401048 Query 14394 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTT 14453 ||||| || | || || || | | || ||| |||||||| ||||| || | || Sbjct 44401049 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATT 44401108 Query 14454 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513 || | ||||| | | | ||||| || |||||||| || ||||||||| |||| |||| Sbjct 44401109 CCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAATGTA 44401168 Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTG 14573 |||||||||| || || || || ||| | ||||| | ||||||| | || || ||| Sbjct 44401169 TGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTT 44401228 Query 14574 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14628 | | ||| || |||| ||| |||| ||||| |||||||| || ||||| || Sbjct 44401229 GGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAA 44401282 Score = 147 bits (162), Expect = 2e-30 Identities = 294/431 (68%), Gaps = 5/431 (1%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| | ||| || | |||||||| || ||||||||||| || |||||||| | Sbjct 137949063 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 137949004 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 || ||||||| |||| |||| || | ||| ||||| || || || || |||||||| Sbjct 137949003 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 137948944 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14383 | | || ||| ||||| ||| | ||||||||| | | | ||||||| Sbjct 137948943 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 137948884 Query 14384 ATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 ||||| | || |||| | | || || || | | | | |||||| |||| ||||| Sbjct 137948883 ATCCAACA-CAAGACCCAAACTGCCTTCTTCTTGACACAGGC-ATTGTTCCAATGGCATT 137948826 Query 14443 AAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14502 || | | |||| | ||||| || | ||||| ||| ||||||| | |||| || Sbjct 137948825 GAAGAGAAATTCCCTTTCTTTGTTATCTTTAATGTGTGT--CAATAAGGAGACTATTTAT 137948768 Query 14503 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14562 ||||| ||||||||||| |||| || || || ||||| || || | ||||| Sbjct 137948767 GTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAAT 137948708 Query 14563 TTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14622 || | ||| |||| ||| |||| ||||||| ||||| ||||||| ||||| Sbjct 137948707 CTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGC 137948648 Query 14623 AAAAAATGCCA 14633 ||| || |||| Sbjct 137948647 AAAGAAAGCCA 137948637 >seq13 Length=108979918 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| || |||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 10124958 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 10124899 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || ||||||||||| || || || ||||| ||||| | Sbjct 10124898 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 10124839 Query 14346 CTATTAATCGTTCTCC 14361 ||| | ||||| || Sbjct 10124838 CTACAACACGTTCACC 10124823 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 10127109 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 10127051 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 10127050 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 10126991 Query 13975 CATAAAATCAAATGGATT 13992 |||||| |||||||| || Sbjct 10126990 CATAAAGTCAAATGGGTT 10126973 Score = 86.0 bits (94), Expect = 6e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 ||||| || |||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 10122847 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 10122788 Query 14534 AAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | ||||||| Sbjct 10122787 AAGCCATAGAAACAGCGGGCTTCTG 10122763 >seq244122 Length=408 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 375 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCT 316 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017 |||||||| ||||| |||||||| |||||||| || | | || || || | || Sbjct 315 TCCAGTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAA 256 Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077 || ||||| | ||| || || | |||||||| |||| ||||| | ||| Sbjct 255 CCCAGTTCCGGCA--TGTCTGTCTGCCACAAACTCAATGTATTTCTTCATTAGAGTGCAA 198 Query 14078 TTCATACCTATTAGTTTTACAGG 14100 ||||| || ||||| || ||||| Sbjct 197 TTCATCCCAATTAGCTTCACAGG 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480628883775040