Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq21 141 8e-29 seq166179 107 2e-18 seq14 107 2e-18 seq16 105 6e-18 seq7 100 3e-16 seq11 98.7 9e-16 seq10 91.5 1e-13 seq5 91.5 1e-13 seq8 82.4 7e-11 >seq21 Length=149150640 Score = 141 bits (156), Expect = 8e-29 Identities = 426/654 (65%), Gaps = 18/654 (3%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 ||||| || || || ||| || ||| | | |||||||| || || || || || | Sbjct 44401474 GATGAGCCGCTGCTGAGAGAAAACCCCTGCCGTTTTGTCATCTTCCCCATCGAGTACCAT 44401415 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || || ||| | ||||| || ||||| ||||| || || ||||||| ||| || || ||| Sbjct 44401414 GATATCTGGCAGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGAC 44401355 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 | ||| ||||| | | | ||||| | ||| || |||||| ||||||| Sbjct 44401354 CCGTCCAAGGACATTTGGCACTGGGAATTCCTGAAGCCCGAGGAGAGATATTTTATATCC 44401295 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || || ||| || || || ||| ||||| || || || | || ||||| || || Sbjct 44401294 CATGTTCTGGTTTTCTTTGC-GCAAGTGATGGCATAGTAAATGCAAACTTGGTGGAGCGA 44401236 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 | | |||||||| || ||||| || || | || || | || || ||| | ||||| Sbjct 44401235 TGTAGCCAAGAAGTTCAGGTGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCATG 44401176 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 |||||| | ||||| | ||||||| | || || || || ||| | || || | | Sbjct 44401175 GAAAACATACATTCTGGAATGTATAGTTTCCTTATTGACACTTACATAAAAGATCCCAA- 44401117 Query 57867 GAGAAACGTAGACTG--TTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAG 57924 ||||| | | | ||||| || || ||||| ||||| || |||||||||| Sbjct 44401116 -AGAAAGGGAATTTCGCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAG 44401058 Query 57925 AGTGGTCAATCAAATGGAT-----AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAAT 57979 | ||| | | | ||||| | |||| | || || | | || | | | Sbjct 44401057 ATTGGGCCTTGCACTGGATTGGGGACAAAG-----CAGCTACCTATGGGGAACGTGTTGT 44401003 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039 | || || || | ||||| | ||||||| || ||||| | ||||| ||| | Sbjct 44401002 AGTCTTTGCTGCAGCGGAAGGCA---TCTTTTCTGGTTATTTTGCATCGATATTCTGGCT 44400946 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 |||||||| || |||||||| ||||| || ||| ||| || | || | || || Sbjct 44400945 CAAGAAACGAGGACTGATGCCTGGCCTCACCTTTTCCAATGAACTTATTAGTGGAGATGA 44400886 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC 58153 |||| | || ||||||||| ||||| |||| | |||| | || | ||||| Sbjct 44400885 GGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAATCACCTGGTACACAAACC 44400832 >seq166179 Length=1001 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| |||||||| || ||||| || || || ||||| || || || || Sbjct 573 ACCTCATCTTTGCTGGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 632 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| |||||||| || ||||| ||||||||||| || || ||| Sbjct 633 CCCAGGTTCTGCTGGTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATATGGGGTG 692 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || || || || ||||| ||||| || Sbjct 693 CCTGTTTCTGTTTGAGACTCAATGATGGC 721 >seq14 Length=127894412 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| |||||||| || ||||| || || || ||||| || || || || Sbjct 63313798 ACCTCATCTTTGCTGGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 63313857 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| |||||||| || ||||| ||||||||||| || || ||| Sbjct 63313858 CCCAGGTTCTGCTGGTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATATGGGGTG 63313917 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || || || || ||||| ||||| || Sbjct 63313918 CCTGTTTCTGTTTGAGACTCAATGATGGC 63313946 >seq16 Length=77216781 Score = 105 bits (116), Expect = 6e-18 Identities = 165/235 (70%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || Sbjct 16306644 TCAAA-ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGGAG 16306586 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| |||||| || || | ||| ||| ||||||||| | || ||| Sbjct 16306585 CCCAGTGACACCATCGAAAATGTGAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCC 16306526 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| ||||||| ||| | || Sbjct 16306525 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAC 16306466 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || ||||| ||||| || || || || || | ||||| || |||| Sbjct 16306465 TACAACATCCAGAAAGAGTCGACCCTGCACCTTGTCCTGCGCCTGAGAGGTGGTA 16306411 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 16306411 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 16306352 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | || ||| || |||||| | || ||||||||| Sbjct 16306351 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAG 16306292 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| ||||||| ||| | || || ||| Sbjct 16306291 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 16306232 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || ||||| || || ||||| || | ||||| || |||| Sbjct 16306231 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGTA 16306183 >seq7 Length=169600520 Score = 100 bits (110), Expect = 3e-16 Identities = 158/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| |||||||| || || || || || || || |||||| |||| ||||||| Sbjct 127523590 CAAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAAC 127523649 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || || | | |||| || || | || ||| |||||||| | || || | Sbjct 127523650 CCTCGGATATGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTG 127523709 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGAT 31366 | ||||| | || || || |||||||| || ||||||| | | | ||| || || Sbjct 127523710 ATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGAC 127523768 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || |||||||| || || ||||||||||| || | ||||| Sbjct 127523769 TACAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 127523812 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 || ||||||| || | |||||||| || ||||| | ||| |||||| | || || | | Sbjct 82646430 CAGACATGCAGATCTCTGTAAAGACCCTCACAGGAAGAACCATCACCTTTGAGGTCCAGC 82646489 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | |||| |||| |||||| | || |||||||| ||| | || || | Sbjct 82646490 CCAGTGACACCAGTGAAAATGTCAAAGCCAAGATCCATGACAAGGAGGGCATCCCACCTG 82646549 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||||| ||| ||||| | |||||||||||||| || ||| | |||| Sbjct 82646550 ACCAGCAGCATCTGATATTTGTGGGCAAACAGTTGGAGGATGGCCACACTCTTTCAGATT 82646609 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAG-ACTGAGG 31414 ||||||| || ||||| || || || || |||| ||| | |||||| Sbjct 82646610 ATAACATCCACAAAGAGTCCACCCTGCAGGTGGTGCTTTGCCCTGAGG 82646657 >seq11 Length=133663169 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || |||||| | || || || || | Sbjct 125063898 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTGGAGCCCAGC 125063839 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | ||||||||||||| | || || ||||| Sbjct 125063838 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATCCCTCCTGACCA 125063780 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | | || || ||||| |||||| ||||||| | | | || || || || | Sbjct 125063779 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGA-TGGACGCACCCTGTCTGACTACA 125063721 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||| || ||||| || ||||| || |||| || | ||||||| ||| Sbjct 125063720 ACATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGGGGT 125063671 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| |||| || || || Sbjct 125065266 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 125065207 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | |||||| || ||| | |||||||||||| | || || ||||| Sbjct 125065206 GACACCATCGAGAACGTCAAAGCAAAGA-TCCAAGACAAGGAAGGCATCCCTCCTGACCA 125065148 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | | || || || || |||||| ||||||| | | | || || || || | Sbjct 125065147 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGA-TGGACGCACCCTGTCTGACTACA 125065089 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| || ||||| || || || || ||||| || Sbjct 125065088 ACATCCAGAAAGAGTCTACCCTGCACCTGGTGCT 125065055 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || |||||| |||| || || || Sbjct 125065038 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 125064979 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||||||| | || || ||||| Sbjct 125064978 GACACCATCGAGAATGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATTCCTCCTGACCA 125064920 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || || || || || ||| ||||||| || || || || || Sbjct 125064919 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 125064860 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||| || || || || ||||| || Sbjct 125064859 CATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 125064827 >seq10 Length=92844088 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/220 (70%), Gaps = 15/220 (7%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || || ||||| || || |||||| | || |||||||| | Sbjct 27013450 ATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTTGAACCCTTG 27013391 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGCCCGACC 31310 ||| |||| || || | |||| | ||| |||||||| | || || || | Sbjct 27013390 AACACAACAGAAAATGTAAAG--GCCAATATCCAGGATAAGGAAGGAATTCCTCCTGATC 27013333 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||| | || || || |||||||| || |||||||| || || || || | Sbjct 27013332 AGCAAAGACTGATCTTTGCTGGCAAGCAATTGGAAGA-----TGTCT------GACTACA 27013284 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||||| || || ||||||||||| || | ||||| Sbjct 27013283 ACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 27013244 >seq5 Length=190429646 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || ||||| || | |||||||| |||||| | || || || | Sbjct 87219425 CAAACATGCAGATCTTTGTGAAGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCGAGC 87219484 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | |||| | || | |||||| | ||| |||||||| || | || || | Sbjct 87219485 CCAGTGACACCATTGAGAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTG 87219544 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||||||| ||||| || |||||||| ||||||| Sbjct 87219545 ACCAGCAGCGTCTGATATTTGCCAGCAAACAGCTGGAAGA 87219584 >seq8 Length=144306982 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || || || || || |||||| |||| |||||||| Sbjct 73239837 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 73239778 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || | | | |||| || || | || ||| |||||||| | || || | Sbjct 73239777 TCGAATACGATAGAAAATGTAAAGGCCAAGATCCAGGAGAAGGAAGGAATTCCTCCTGCT 73239718 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 | ||| | || || || |||||||| || ||||||| | | | ||| || || || Sbjct 73239717 CTGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 73239659 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || |||||||| || || ||||||||||| || | ||||| Sbjct 73239658 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 73239617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444179872805760