Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq21 239 4e-58 seq8 114 1e-20 seq14 93.3 4e-14 >seq21 Length=149150640 Score = 239 bits (264), Expect = 4e-58 Identities = 611/918 (67%), Gaps = 38/918 (4%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 ||||||| | ||| | | ||| |||||| | ||||| || | |||| || | || | Sbjct 44400547 ATTCTCTGTTGGATTCGACACCACTCCCATCCTCTGATACTCCTTTACTC-TCTTCTCAA 44400605 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || || ||||| | ||||| |||| |||||||||| ||| || || | ||| Sbjct 44400606 AGAAGTTCGTCTTTC-----AGTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTC 44400660 Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 |||| || || | |||| | || | | ||| ||||| || || || || || | Sbjct 44400661 TGAAAACCTTGCTAAAACCCAGTTCCGGCATG--TCTGTCTGCCACAAACTCAATGTATT 44400718 Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546 | ||||| | |||||||| || || || | ||| || | || | || | || | Sbjct 44400719 GCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAATT 44400778 Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGAT 11606 ||| |||||| ||| |||| || ||| | ||| |||| ||||| | Sbjct 44400779 CCTGTTCTATCCGAACAGCATTGATAATTCTTTCTCTTACTCTCTCCTCCAATGGTTTGT 44400838 Query 11607 GTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTA 11666 ||| | || || ||||| | || ||||||||||| |||||||| || |||| ||| | Sbjct 44400839 GTACCAGGTGATTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCCACTAA 44400898 Query 11667 TTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAG 11726 | |||||||| ||||| || | || ||||||| ||||||||| || | ||| ||||| | Sbjct 44400899 TAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCG 44400958 Query 11727 CAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTC 11786 ||||| ||||||||||| || || ||| | || ||||| |||| || | ||| | Sbjct 44400959 ATGCAAAATAACCAGAAAAG---ATGCCTTCCGCTGCAGCAAAGACTACAACACGTTCCC 44401015 Query 11787 CATA------TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTA 11840 |||| | | |||| | | ||||| | ||||||||| || ||||| || | Sbjct 44401016 CATAGGTAGCTGCTTTGTCCCCA---ATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGA 44401072 Query 11841 CGCATTCCATTGTTTCTATAGCGTTAAA--TAAATGCATTTTTTCTATATTATCTCTTAC 11898 | || ||| ||||| || || || || |||| | ||||| | |||| ||| Sbjct 44401073 CACAAGGCATCGTTTCAATGGCATTGAAGCGAAATTC--CCTTTCTTTGGGATCTTTTAT 44401130 Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 || || || || | |||||||||||| | ||||| || |||||||| || ||||| || Sbjct 44401131 GTAAGTGTCAATAAGGAAACTATACATTCCAGAATGTATGTTTTCCATGGCAATTTGGAA 44401190 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018 ||| ||||||| || || |||| ||| || || | ||| ||| | || || Sbjct 44401191 GCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTTGGCTACATCGCTCCACCAAGTT 44401250 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 ||||||| || |||||||| | ||||| || | || | ||| |||||| ||| | Sbjct 44401251 TGCATTTACTATGCCATCACTTG-CGCAAAGAAAACCAGAACATGGGATATAAAATATCT 44401309 Query 12079 TTC----GTCTTTAGTTAATTTATCCCAATCATCTAAA--TCTTTTGATAAATCTACTTC 12132 || | ||| || ||| ||||| | | ||| || || || || || || Sbjct 44401310 CTCCTCGGGCTTCAG-GAAT---TCCCAGT--GCCAAATGTCCTTGGACGGGTCCACCTC 44401363 Query 12133 TTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTT 12192 || ||||||| || || | | | |||||||| | |||||||||||| |||| Sbjct 44401364 CTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGCCAGATATCATGGTACTC 44401423 Query 12193 AATAGGGAAAATAACGAA 12210 || ||||| || || || Sbjct 44401424 GATGGGGAAGATGACAAA 44401441 Score = 159 bits (176), Expect = 3e-34 Identities = 318/463 (69%), Gaps = 16/463 (3%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| | ||| |||||||| || || || || || |||||||| |||||||| | Sbjct 137949063 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 137949004 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || ||||||| |||| |||| || | ||| ||||| ||||| |||||||||||||| Sbjct 137949003 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 137948944 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCAT--ATA----CCTTGTTGCTA 11803 | | ||||| ||||| ||| | || | |||||||| || | ||||| | | Sbjct 137948943 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 137948884 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 ||||| | ||||| | || ||||| || || || ||||||| | || || Sbjct 137948883 ---ATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTCCAATGGCA 137948828 Query 11864 TT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921 || | | |||| | ||||| | |||||| ||| || ||| || || | | ||||| Sbjct 137948827 TTGAAGAGAAATTC--CCTTTCTTTGTTATCT-TTA-ATGTGTGTCAATAAGGAGACTAT 137948772 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 || || ||||| || ||||| |||| ||||| || |||||||| || | |||| Sbjct 137948771 TTATGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTG 137948712 Query 11982 AACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAG 12041 | ||| | || | |||| |||| | || || |||| ||| || ||||||| | Sbjct 137948711 TAATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATG 137948652 Query 12042 ATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084 |||||| || || || |||| |||||| ||| |||| || Sbjct 137948651 CTGCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTC 137948609 >seq8 Length=144306982 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 100933381 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 100933440 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 100933441 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 100933500 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 100933501 CCACCACTCTTTCCCC 100933516 >seq14 Length=127894412 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| || || ||||||||| Sbjct 63303929 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 63303988 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || || |||||||| || || || || | Sbjct 63303989 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 63304048 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 63304049 CTGTTTCTTATACCAT 63304064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466857273384320