Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq21 95.1 9e-15 >seq21 Length=149150640 Score = 95.1 bits (104), Expect = 9e-15 Identities = 124/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 22752 CTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAA 22811 |||||| || | |||||| || |||||||| | ||||| | ||||||||||| || Sbjct 44400999 CTTTGCTGCAGCGGAAGGCATC---TTTTCTGGTTATTTTGCATCGATATTCTGGCTCAA 44400943 Query 22812 GAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGG 22871 |||||| || ||||| || | | |||||||| || | ||||| | || || || Sbjct 44400942 GAAACGAGGACTGATGCCTGGCCTCACCTTTTCCAATGAACTTATTAGTGGAGATGAGGG 44400883 Query 22872 TCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 | |||||||||| |||||||| || |||| | || ||| | ||||||| Sbjct 44400882 TTTACACTGTGATTTTGCTTGCCTGATGTTCAATCACCTGGTACACAAACC 44400832 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| || ||| || | | |||||||| || ||||| ||||||||||| Sbjct 137948921 GCCTTTGCCCTAGTGGAAAGCACCTTCTTTTCTGGTTCTTTTGCACTGATATTCTGGCTC 137948980 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||||| || ||||| || | | |||||||| || | |||||| |||| || Sbjct 137948981 AAGAAACAAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGTGATGAG 137949040 Query 22870 GGTCTACACTGTGACTTTGCTTG 22892 ||| |||||||| |||||||||| Sbjct 137949041 GGTTTACACTGTTACTTTGCTTG 137949063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354997425769384