Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq11 122 9e-23 seq16 104 2e-17 seq27331 86.0 6e-12 seq10 84.2 2e-11 seq21 82.4 8e-11 >seq11 Length=133663169 Score = 122 bits (134), Expect = 9e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-T 139605 || |||| || ||||| | || |||||||| || ||||| || || || |||| | Sbjct 125063681 AAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGT 125063740 Query 139606 CGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTC 139665 | | ||||| |||||||| |||||| |||||| | ||||| || ||||| |||||||| Sbjct 125063741 CCA-TCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTC 125063799 Query 139666 TTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| ||| || | | || | |||||| ||||||||||||||| ||| Sbjct 125063800 CTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCAAGGGT 125063859 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||||||| || | || || ||||| || ||||| Sbjct 125063860 GATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 125063898 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || |||| | ||||| |||||||| ||| Sbjct 125063930 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCA 125063989 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || ||||| |||||||| || || ||| ||| || Sbjct 125063990 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTTGCCTTG 125064049 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||||||||||||||| ||| | |||||||| || | || Sbjct 125064050 ACATTCTCAATGGTGTCGCTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 125064109 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 125064110 TTCACGAAGATCTGCAT 125064126 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || |||| | ||||| ||||| || ||| Sbjct 125064614 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCA 125064673 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || ||||| ||||| || ||||| ||| ||| || Sbjct 125064674 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 125064733 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| ||||||||||||||| ||| | |||||||| |||| || Sbjct 125064734 ACATTTTCAATAGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 125064793 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 125064794 TTCACGAAGATCTGCAT 125064810 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 ||||||||||| || ||||| || || || |||| || | ||||| |||||||| || Sbjct 125065070 GTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCTGTTTCCC 125065128 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||||| | ||||| || ||||| |||||||| ||||| ||| ||| ||| Sbjct 125065129 GGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCTTT 125065188 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| ||||||| ||||| | ||| | |||||||| |||| || Sbjct 125065189 GACGTTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 125065248 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 125065249 CTTCACGAAGATCTGCAT 125065266 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| |||||||| || || || |||| | ||||| |||||||| ||| Sbjct 125064158 GTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCA 125064217 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || ||||| |||||||| || || ||| ||| || Sbjct 125064218 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTTGCCTTG 125064277 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||||||||||||| | || | |||||||| || | || Sbjct 125064278 ACATTCTCAATGGTGTCGCTGGGCTCCACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTC 125064337 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 125064338 TTCACGAAGATCTGCAT 125064354 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || |||| | ||||| ||||| || ||| Sbjct 125064386 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCA 125064445 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || ||||| ||||| || ||||| ||| ||| || Sbjct 125064446 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 125064505 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| ||||||||||||| | ||| | |||||||| |||| || Sbjct 125064506 ACATTTTCAATAGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 125064565 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 125064566 TTCACGAAGATCTGCAT 125064582 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || |||| | ||||| ||||| || || Sbjct 125064842 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCG 125064901 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || ||||| |||||||| ||||| ||| ||| || Sbjct 125064902 GCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTG 125064961 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | |||||||| || | || Sbjct 125064962 ACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 125065021 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 125065022 TTCACGAAGATCTGCAT 125065038 >seq16 Length=77216781 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || |||||||| || ||||| || || | |||| Sbjct 16306425 CGCAGGACAAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 16306484 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| ||||| || |||||||| || Sbjct 16306485 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTA 16306544 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| || | | ||| | ||||| ||||||||||||||| ||| | Sbjct 16306545 TCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATG 16306604 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || ||||| || ||||| Sbjct 16306605 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16306639 Score = 102 bits (112), Expect = 8e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| ||||| || ||||||||||| Sbjct 16306029 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTA 16306088 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| ||||||||||||| | ||| | Sbjct 16306089 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 16306148 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| ||||| ||||| || |||||| Sbjct 16306149 GTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATA 16306184 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| |||||||| ||||||||||| Sbjct 16306257 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTA 16306316 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| |||||||||| || | ||| | Sbjct 16306317 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 16306376 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| || || ||||| || |||||| Sbjct 16306377 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 16306412 >seq27331 Length=523 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| |||||||| ||||||||||| Sbjct 309 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTA 368 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || || ||||| ||||||||||||| | ||| | Sbjct 369 TCCTGGATCTTGGCCTTCACATTTTTCATGGTGTCCCTGGGCTCCACCTCCAGGGTGATT 428 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| | |||| || | | ||| |||| ||| Sbjct 429 GTCTTGCTGATCAAGGTCGTCATGAAGATTTTCAT 463 >seq10 Length=92844088 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/203 (68%), Gaps = 11/203 (5%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| |||||||| ||||||||||| || || || ||||| | || Sbjct 27013259 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACA-----------TCTTCCAATTGC 27013307 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| ||||||| | ||||||||| ||||| || ||||| || || ||| || Sbjct 27013308 TTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATATTG 27013367 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 |||| | ||| ||||| ||| || ||||||| ||| | ||||| || || Sbjct 27013368 GCCTTTACATTTTCTGTTGTGTTCAAGGGTTCAACCTCAAGGGTGATGGTCTTCCCTGTA 27013427 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 27013428 AGGGTTTTCACGAAAATCTGCAT 27013450 >seq21 Length=149150640 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| |||| ||| ||||||||||| | || || || | |||||| || || Sbjct 2777380 TGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCGTCTTCCAGTTGC 2777321 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 | |||||| ||||||| | ||||||||| ||||| || ||||| || || ||| || Sbjct 2777320 TCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 2777261 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 |||| | ||| | || || | ||| || | ||||| ||| | ||||| || | Sbjct 2777260 GCCTTTACATTTTCTGCCGTATCTGAGGGTTCAATCTCAAGGGTGATAGTCTTCCCCCTT 2777201 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 2777200 AGGGTTTTCACGAAAATCTGCAT 2777178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494298458617600