Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq237451 120 3e-22 seq128769 120 3e-22 seq128457 120 3e-22 seq1 116 3e-21 seq12 114 1e-20 seq114127 111 1e-19 seq9 105 6e-18 seq226669 91.5 1e-13 seq73905 91.5 1e-13 >seq237451 Length=7360 Score = 120 bits (132), Expect = 3e-22 Identities = 179/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329 |||||||| ||||| | ||| |||| | | |||| | | || |||||||| || Sbjct 364 TCGGTGTCATCCAAAGCTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATG 423 Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389 || || || || | || ||||| || || ||||| | || || || |||||||| Sbjct 424 AGTTGTGCAATTCGATCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGT 483 Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449 || || || ||||| |||| || ||||| || || || ||||| || || || |||||| Sbjct 484 ACAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAG 543 Query 5450 TGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTTT 5509 ||||| | || | ||| || ||||| |||| | ||| || || |||| |||||| | Sbjct 544 TGTTTTGCAGCCAAGCCTGACCGTGGAGCTACTCTTCCATAACACCCAGAAGGGAGCGCT 603 Query 5510 ATCAGAAGGTCAGT 5523 ||| ||| ||| || Sbjct 604 ATCTGAATGTCCGT 617 >seq128769 Length=6953 Score = 120 bits (132), Expect = 3e-22 Identities = 179/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329 |||||||| ||||| | ||| |||| | | |||| | | || |||||||| || Sbjct 6590 TCGGTGTCATCCAAAGCTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATG 6531 Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389 || || || || | || ||||| || || ||||| | || || || |||||||| Sbjct 6530 AGTTGTGCAATTCGATCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGT 6471 Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449 || || || ||||| |||| || ||||| || || || ||||| || || || |||||| Sbjct 6470 ACAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAG 6411 Query 5450 TGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTTT 5509 ||||| | || | ||| || ||||| |||| | ||| || || |||| |||||| | Sbjct 6410 TGTTTTGCAGCCAAGCCTGACCGTGGAGCTACTCTTCCATAACACCCAGAAGGGAGCGCT 6351 Query 5510 ATCAGAAGGTCAGT 5523 ||| ||| ||| || Sbjct 6350 ATCTGAATGTCCGT 6337 >seq128457 Length=7192 Score = 120 bits (132), Expect = 3e-22 Identities = 179/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329 |||||||| ||||| | ||| |||| | | |||| | | || |||||||| || Sbjct 364 TCGGTGTCATCCAAAGCTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATG 423 Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389 || || || || | || ||||| || || ||||| | || || || |||||||| Sbjct 424 AGTTGTGCAATTCGATCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGT 483 Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449 || || || ||||| |||| || ||||| || || || ||||| || || || |||||| Sbjct 484 ACAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAG 543 Query 5450 TGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTTT 5509 ||||| | || | ||| || ||||| |||| | ||| || || |||| |||||| | Sbjct 544 TGTTTTGCAGCCAAGCCTGACCGTGGAGCTACTCTTCCATAACACCCAGAAGGGAGCGCT 603 Query 5510 ATCAGAAGGTCAGT 5523 ||| ||| ||| || Sbjct 604 ATCTGAATGTCCGT 617 >seq1 Length=225584828 Score = 116 bits (128), Expect = 3e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | ||||||||||| ||||||||| |||| ||||||||| Sbjct 159841382 GGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 159841441 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || || || || || |||| || |||||||| ||||| || ||||| ||||| || || Sbjct 159841442 CCCCAAGCTGAGAACCACGACCCAGACATCAAGGAGCATGTGAACTCCCTGGGGGAGAAT 159841501 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || || | || | ||||| ||||| Sbjct 159841502 CTGAAGACCCTCAGGCTGAGGCTGCGGCGCTG 159841533 Score = 82.4 bits (90), Expect = 7e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 129104 AGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACATAGAATCATACAT 129163 |||||| ||||| |||||||| ||||| ||||| |||||||||||||||||| | ||||| Sbjct 159843785 AGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACATAGAAGCCTACAT 159843844 Query 129164 GAC 129166 ||| Sbjct 159843845 GAC 159843847 >seq12 Length=125506784 Score = 114 bits (126), Expect = 1e-20 Identities = 178/254 (70%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329 |||||||| ||||| | ||| ||| | | |||| | | || |||||||| || Sbjct 61856447 TCGGTGTCATCCAAAGCTTGAACTTCT---ATTTCTGGATAAAAAATCCGTTCGCAAATG 61856391 Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389 ||||| || || | || ||||| || || ||||| | || || || || ||||| Sbjct 61856390 AGCTGTGCAATTCGATCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTGAACAGT 61856331 Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449 || || || ||||| |||| || ||||| | || || ||||| || ||||| |||||| Sbjct 61856330 ACAACACCAACATTTCCTCTATAATCTTCATTTATGACACCAGCTCCTACGTCAATAAAG 61856271 Query 5450 TGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTTT 5509 ||||| | || | ||| || ||||| |||| | ||| || || |||| |||||| | Sbjct 61856270 TGTTTTGCAGCCAAGCCTGACCGTGGAGCTACTCTTCCATAACACCCAGAAGGGAGCGCT 61856211 Query 5510 ATCAGAAGGTCAGT 5523 ||| ||| ||| || Sbjct 61856210 ATCTGAATGTCCGT 61856197 >seq114127 Length=15708 Score = 111 bits (122), Expect = 1e-19 Identities = 177/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329 |||||||| ||||| | ||| |||| | | ||| | | || |||||||| || Sbjct 9571 TCGGTGTCATCCAAAGCTTGAACTTCTTCTATTTCTGCATAAAAAATCCGTTCGCAAATG 9630 Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389 || || || || | || ||||| || || ||||| | || || || |||||||| Sbjct 9631 AGTTGTGCAATTCGATCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGT 9690 Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449 || || || ||||| |||| || ||||| || || || ||||| || || || |||||| Sbjct 9691 ACAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAG 9750 Query 5450 TGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTTT 5509 ||||| | || | ||| || | ||| |||| | ||| || || |||| |||||| | Sbjct 9751 TGTTTTGCAGCCAAGCCTGACCTTGGAGCTACTCTTCCATAACACCCAGAAGGGAGCGCT 9810 Query 5510 ATCAGAAGGTCAGT 5523 ||| ||| ||| || Sbjct 9811 ATCTGAATGTCCGT 9824 >seq9 Length=129882849 Score = 105 bits (116), Expect = 6e-18 Identities = 177/255 (69%), Gaps = 1/255 (0%) Strand=Plus/Plus Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329 |||||||| ||||| | ||| |||| | | |||| | | || |||||||| || Sbjct 87873895 TCGGTGTCATCCAAAGCTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATG 87873954 Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389 ||||| || || | || | ||| || || ||||| | || || ||||||||||| Sbjct 87873955 AGCTGTGCAATTCGATCACACTTTTTGACTTCAAACTTTTCTTTGCCAAAGTTAAACAGT 87874014 Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449 || | || ||||| |||| || ||||| || || || ||||| || || || |||||| Sbjct 87874015 ACACCACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAG 87874074 Query 5450 TG-TTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTT 5508 || |||| || | ||| || |||| |||| | ||| || | |||| |||||| Sbjct 87874075 TGTTTTGCAAGCCAAGCCTGACTGTGGAGCTACTCTTCCATAACGCCCAGAAGGGAGCGC 87874134 Query 5509 TATCAGAAGGTCAGT 5523 |||| ||| ||| || Sbjct 87874135 TATCTGAATGTCCGT 87874149 >seq226669 Length=10677 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329 |||||||| ||||| | ||| |||| | | |||| | | || |||||||| || Sbjct 196 TCGGTGTCATCCAAAGCTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATG 137 Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389 || || || || | || ||||| || || ||||| | || || || |||||||| Sbjct 136 AGTTGTGCAATTCGATCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGT 77 Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449 || || || ||||| |||| || ||||| || || || ||||| || || || |||||| Sbjct 76 ACAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAG 17 Query 5450 TGTTT 5454 ||||| Sbjct 16 TGTTT 12 >seq73905 Length=5251 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329 |||||||| ||||| | ||| |||| | | |||| | | || |||||||| || Sbjct 5056 TCGGTGTCATCCAAAGCTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATG 5115 Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389 || || || || | || ||||| || || ||||| | || || || |||||||| Sbjct 5116 AGTTGTGCAATTCGATCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGT 5175 Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449 || || || ||||| |||| || ||||| || || || ||||| || || || |||||| Sbjct 5176 ACAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAG 5235 Query 5450 TGTTT 5454 ||||| Sbjct 5236 TGTTT 5240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446156811551360