Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq18 104 2e-17 >seq18 Length=70235451 Score = 104 bits (114), Expect = 2e-17 Identities = 126/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| ||||| || |||| |||||||||||| || || || || || | ||| Sbjct 8843843 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTC 8843902 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCT-TATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 || ||||| ||| || | | |||| | ||||||||||||| ||| |||||||| | Sbjct 8843903 CCCTTCTTCTCTG-GCGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCAT 8843961 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||||| || || ||||| || |||||||| | ||||| || || Sbjct 8843962 CCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTAGATCC 8844010 Score = 82.4 bits (90), Expect = 5e-11 Identities = 109/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||||||||| || || || || | |||||| Sbjct 8839061 GCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACACCTAGGCCCATG 8839120 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | ||||| |||||||| ||||| || || ||||| || ||| || ||||| || Sbjct 8839121 T-CTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACCACATAGAACTGGCA 8839179 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | | | ||| ||||| || || || || Sbjct 8839180 GAGAGCATGGCATGGAGGCAGTGCCATCAG 8839209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338957280861144