Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4 87.8 9e-13 seq7 86.0 3e-12 seq250095 82.4 4e-11 seq112151 82.4 4e-11 seq14884 82.4 4e-11 seq16 82.4 4e-11 >seq4 Length=172585720 Score = 87.8 bits (96), Expect = 9e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 ||||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||| Sbjct 28089401 AATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACC 28089342 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 28089341 AACTGAGCTAACCGGCC 28089325 Score = 86.0 bits (94), Expect = 3e-12 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 ||||||||||| |||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 27671445 GGATCGAACCTGCGACCTCGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 27671504 Query 11528 CCGTCG 11533 || ||| Sbjct 27671505 CCCTCG 27671510 Score = 84.2 bits (92), Expect = 1e-11 Identities = 81/105 (77%), Gaps = 5/105 (5%) Strand=Plus/Plus Query 11426 GGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCT 11485 |||||| | |||| |||| | | || |||||| | |||||||||| |||||| Sbjct 27576471 GGGAAAAAAAGAA-----AAAACAACTAAGTGGCCCGTACGGGGATCGAACCCGCGACCT 27576525 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 | ||||||||||||| ||||||| |||| ||||||||| ||||| Sbjct 27576526 TGGCGTTATTAGCACCACGCTCTAACCAGCTGAGCTAACCGGCCG 27576570 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 27183599 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 27183540 Query 11528 CC 11529 || Sbjct 27183539 CC 27183538 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 28069801 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 28069742 Query 11528 CC 11529 || Sbjct 28069741 CC 28069740 >seq7 Length=169600520 Score = 86.0 bits (94), Expect = 3e-12 Identities = 83/105 (79%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 11426 GGGAAATATAGAATTAATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACC 11484 |||||| | | || || |||||| | | | |||||| | |||||||||| ||||| Sbjct 164554446 GGGAAAAAAAAAA--AACAAAAAAGCGACACTGGCCCGTACGGGGATCGAACCCGCGACC 164554389 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || ||||||||||||| ||||||| |||||||||||||| |||| Sbjct 164554388 TTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 164554344 >seq250095 Length=27324 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 11625 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 11566 Query 11528 CC 11529 || Sbjct 11565 CC 11564 >seq112151 Length=27323 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 11625 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 11566 Query 11528 CC 11529 || Sbjct 11565 CC 11564 >seq14884 Length=25953 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 16656 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 16597 Query 11528 CC 11529 || Sbjct 16596 CC 16595 >seq16 Length=77216781 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 8214061 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 8214002 Query 11528 CC 11529 || Sbjct 8214001 CC 8214000 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260583793503328