Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4 163 4e-36 seq231398 131 3e-26 seq1 127 3e-25 >seq4 Length=172585720 Score = 163 bits (180), Expect = 4e-36 Identities = 197/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| | | || || ||||| || || ||||| |||||||| || Sbjct 26864808 CGCTAAGCGTCACCGCAAGGTTTTGCGGGACAACATTCAGGGCATCACTAAGCCAGCCAT 26864749 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| || || || ||||||||| | ||||| | ||||||| |||| Sbjct 26864748 CCGCCGCCTTGCTCGCCGCGGCGGTGTCAAGCGTATTTCTGGCCTTATCTATGAGGAGAC 26864689 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | ||||| ||| ||| || | |||||| || || || || Sbjct 26864688 CCGTGGCGTTCTGAAGGTGTTCCTGGAGAACGTGATTCGTGATGCAGTCACTTACACGGA 26864629 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| |||||||| |||||||| || | |||||| | |||||||| |||| || || || Sbjct 26864628 GCATGCTAAACGCAAGACTGTAACAGCAATGGATGTGGTCTATGCGCTGAAGCGACAGGG 26864569 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | |||| || || || ||||| Sbjct 26864568 ACGCACTCTTTACGGCTTCGGTGGTTAA 26864541 Score = 154 bits (170), Expect = 2e-33 Identities = 190/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||| | || || ||||||||||| || ||||| ||||| ||||| Sbjct 26688833 GCTAAGCGCCATCGTAAGGTGCTCCGGGATAACATCCAGGGCATCACAAAGCCGGCTATT 26688892 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| || ||||| |||||||| | || || | ||||||| || | | Sbjct 26688893 CGCCGTTTGGCTCGGCGCGGTGGCGTCAAGCGCATTTCCGGTCTCATCTATGAGGAAACT 26688952 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||| | ||| |||||| | || ||| | |||||| ||| Sbjct 26688953 CGAGGTGTGCTGAAGGTTTTCTTAGAGAACGTTATTCGAGACGCTGTTACCTATACGGAG 26689012 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || || |||||||| |||||||| | || ||||| | |||||||| || Sbjct 26689013 CACGCCAAGCGCAAAACTGTCACAGCCATGGATGTAGTATATGCTCTAAAACGTCAGGGG 26689072 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||| || || Sbjct 26689073 CGCACTCTGTATGGCTTCGG 26689092 Score = 150 bits (166), Expect = 3e-32 Identities = 192/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | | || || || || ||||||||||||||||||||||| | Sbjct 26773387 CGCCAAGCGTCACCGCA-AGGTGTTGCGCGACAATATCCAAGGAATCACCAAGCCAGCCA 26773329 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || || || ||||||||| | ||||| | ||||||| |||| Sbjct 26773328 TCCGCCGCCTGGCTCGCCGCGGCGGCGTCAAGCGTATTTCTGGCCTCATCTATGAGGAGA 26773269 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || ||||| | || || | | || |||| |||||| || ||| || | Sbjct 26773268 CTCGCGGAGTGCTGAAGGTTTTTCTGGAAAATGTAATCCGCGATGCTGTCACCTACACGG 26773209 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||||| ||||| ||||| ||||||| | || || || | || || || | Sbjct 26773208 AGCACGCCAAACGCAAGACGGTCACAGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 26773149 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | | ||||| || || Sbjct 26773148 GACGCACTCTGTATGGCTTCGG 26773127 Score = 149 bits (164), Expect = 1e-31 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| | || || || |||||||| || |||||||||||||| ||| Sbjct 27542887 GCCAAGCGCCACCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCAGCCATC 27542946 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || || || || || || || ||||| |||| || | ||||||| |||| Sbjct 27542947 CGGCGCCTTGCCCGCCGCGGCGGTGTGAAGCGCATCTCCGGCCTCATCTATGAGGAGACC 27543006 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| ||||||| ||| ||| |||| || || | ||| || ||| Sbjct 27543007 CGCGGGGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGAG 27543066 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| | |||||||| |||| || || ||| Sbjct 27543067 CACGCCAAGCGCAAGACGGTCACCGCCATGGACGTAGTCTATGCGCTGAAGCGCCAGGGC 27543126 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | ||||||| || || Sbjct 27543127 CGCACCCTTTATGGCTTCGG 27543146 Score = 145 bits (160), Expect = 1e-30 Identities = 191/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGA-TCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| |||| | ||| | |||||||||||||| || || ||||| || || | Sbjct 26789372 CGCTAAGCGTCACCGCAAAGTCT-TGCGAGATAACATCCAGGGTATTACCAAACCTGCCA 26789430 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||| || || || |||||||| | |||||| | ||||||| |||| Sbjct 26789431 TCCGGCGTCTTGCTCGGCGCGGCGGTGTCAAGCGCATTTCTGGACTCATCTATGAGGAGA 26789490 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | || || ||| ||| |||| ||| ||| | || || | Sbjct 26789491 CCCGCGGGGTGCTGAAGGTGTTTCTAGAGAACGTAATCCGTGACGCTGTTACTTACACGG 26789550 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| || || | |||||| | ||||| || | ||||| || | Sbjct 26789551 AGCACGCCAAGCGCAAGACCGTAACAGCTATGGATGTGGTCTACGCTCTCAAACGACAGG 26789610 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | |||| || || || Sbjct 26789611 GACGCACTCTTTACGGCTTCGG 26789632 Score = 145 bits (160), Expect = 1e-30 Identities = 193/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 28242119 CGCTAAGCGCCACCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 28242060 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| || || || || ||||| ||||||| | |||| || |||| Sbjct 28242059 CCGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGCATCTCTGGCCTCATCTACGAGGAGAC 28242000 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || |||| ||||||| ||| ||| |||| || ||| | ||| || || Sbjct 28241999 CCGTGGGGTGCTGAAAGTCTTCCTGGAGAACGTGATCCGGGACGCTGTGACCTACACGGA 28241940 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | || || || |||| || || || Sbjct 28241939 GCACGCCAAGCGCAAGACGGTCACCGCCATGGATGTGGTTTACGCGCTGAAGCGCCAGGG 28241880 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| || ||||| Sbjct 28241879 ACGCACCCTCTACGGTTTCGGCGGTTAA 28241852 Score = 143 bits (158), Expect = 4e-30 Identities = 199/279 (71%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || |||||||||||||| ||||| ||||| || || Sbjct 26612127 CGCCAAGCGCCACCGGAAAGTGCTGCGGGATAACATCCAAGGCATCACTAAGCCGGCCAT 26612068 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || || ||| | |||||||| || || || |||| || ||| | || || |||| Sbjct 26612067 TCGGCGCCTTGCTAGGCGTGGTGGGGTTAAACGGATCTCCGGTTTGATTTACGAGGAGAC 26612008 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | |||| | ||| | || || ||| ||| |||| || || | |||||| || Sbjct 26612007 CCGAGGTGTTCTCAAGGTTTTTCTGGAGAACGTGATCCGGGACGCCGTGACCTATACGGA 26611948 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||||||||| |||||||| | || || || | || || ||||| Sbjct 26611947 GCACGCCAAGCGCAAGACTGTCACTGCCATGGATGTGGTTTACGCGCTCAAGCGCCAAGG 26611888 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCA 16710 || | | || ||||| || |||||| || || ||| Sbjct 26611887 ACGCACTCTATACGGTTTCGGCGGTTAATATTTTAGTCA 26611849 Score = 140 bits (154), Expect = 5e-29 Identities = 189/261 (72%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | | || || || |||||||| || ||||||||||| || || Sbjct 26606750 GCCAAGCGCCACCGCA-AGGTGTTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 26606808 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || ||||| || |||||| | ||||||| || |||| || |||| Sbjct 26606809 CCGGCGTCTGGCCCGGCGTGGAGGTGTCAAGAGGATCTCTGGTCTGATCTACGAGGAGAC 26606868 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| | || | ||| ||| |||| ||| ||| || |||||| || Sbjct 26606869 TCGCGGGGTGCTCAAGGTGTTTTTGGAGAACGTGATCCGTGACGCTGTCACCTATACGGA 26606928 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || ||||| ||||| | ||||| | ||||| || | || || || || Sbjct 26606929 ACACGCCAAGCGCAAGACGGTCACTGCTATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 26606988 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | ||||||| ||||| Sbjct 26606989 ACGCACCCTTTATGGCTTTGG 26607009 Score = 138 bits (152), Expect = 2e-28 Identities = 187/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || || ||||| || ||||||||||| || || Sbjct 28237510 CGCTAAGCGCCACCGCAAGGTGCTGCGTGACAATATCCAGGGCATCACCAAGCCGGCCAT 28237569 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| || || || || ||||| ||||||| | |||| || |||| Sbjct 28237570 CCGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGCATCTCTGGCCTCATCTACGAGGAGAC 28237629 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || |||| ||||||| ||| ||| |||| || ||| | ||| || || Sbjct 28237630 CCGTGGGGTGCTGAAAGTCTTCCTGGAGAACGTGATCCGGGACGCTGTGACCTACACGGA 28237689 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | || || || |||| || || || Sbjct 28237690 GCACGCCAAGCGCAAGACGGTCACCGCCATGGATGTGGTTTACGCGCTGAAGCGCCAGGG 28237749 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || ||||| || Sbjct 28237750 ACGCACCCTCTACGGTTTCGG 28237770 Score = 102 bits (112), Expect = 1e-17 Identities = 179/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | || || || || || || || |||||||||||||| || Sbjct 28285948 CGCTAAGCGCCACCGCAAAGTCCTGCGCGACAATATTCAGGGTATCACCAAGCCAGCCAT 28285889 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | | || || |||| Sbjct 28285888 CCGACGCCTGGCACGGCGAGGAGGCGTTAAGCGCATCTCAGGCCTTATATACGAGGAGAC 28285829 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | || | ||| || |||| ||||| | ||| || || Sbjct 28285828 GCGCGGAGTTCTTAAGGTGTTTTTGGAGAATGTGATCCGCGATGCAGTTACCTACACGGA 28285769 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||||| ||||| ||||| ||||||| | || || || | || || || || Sbjct 28285768 ACATGCCAAACGCAAGACAGTCACGGCCATGGACGTGGTTTACGCGCTCAAGCGCCAGGG 28285709 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | ||||| ||||| Sbjct 28285708 TCGCACCCTCTATGGCTTTGG 28285688 >seq231398 Length=8247 Score = 131 bits (144), Expect = 3e-26 Identities = 177/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | || || |||| ||||| || || ||||||||||| || | Sbjct 3103 CGCTAAGCGCCACCGCAAGGTC-CTGAGAGACAACATTCAGGGCATCACCAAGCCTGCCA 3045 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| ||||| || || ||||| ||||||| | | || || |||| Sbjct 3044 TTCGGCGTCTAGCTCGGCGTGGCGGCGTTAAGCGGATCTCTGGCCTCATTTACGAGGAGA 2985 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| | ||||| ||| ||| || | || || || ||| |||| Sbjct 2984 CCCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATTCGGGACGCAGTCACCTACACCG 2925 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| |||||||| | || || || | || || || | Sbjct 2924 AGCACGCCAAGCGCAAGACCGTCACAGCCATGGATGTGGTGTACGCGCTCAAGCGCCAGG 2865 Query 16671 GCCG 16674 | || Sbjct 2864 GGCG 2861 >seq1 Length=225584828 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | || || |||| ||||| || || ||||||||||| || | Sbjct 124191173 CGCTAAGCGCCACCGCAAGGTC-CTGAGAGACAACATTCAGGGCATCACCAAGCCTGCCA 124191231 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| ||||| || || ||||| ||||||| | | || || |||| Sbjct 124191232 TTCGGCGTCTAGCTCGGCGTGGCGGCGTTAAGCGGATCTCTGGCCTCATTTACGAGGAGA 124191291 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| | || || ||| ||| || | || || || ||| |||| Sbjct 124191292 CCCGCGGTGTGCTGAAGGTGTTTCTGGAGAACGTGATTCGGGACGCAGTCACCTACACCG 124191351 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| |||||||| | || || || | || || || | Sbjct 124191352 AGCACGCCAAGCGCAAGACCGTCACAGCCATGGATGTGGTGTACGCGCTCAAGCGCCAGG 124191411 Query 16671 GCCG 16674 | || Sbjct 124191412 GGCG 124191415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78814871196504