Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq21 176 5e-39 seq8 104 2e-17 seq244122 93.3 4e-14 seq13 87.8 2e-12 >seq21 Length=149150640 Score = 176 bits (194), Expect = 5e-39 Identities = 524/808 (65%), Gaps = 17/808 (2%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | || |||| | |||| Sbjct 44400515 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGATTCGACACCACTCCC 44400574 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||||| | ||| ||| Sbjct 44400575 ATCCTCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATA 44400629 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||||| |||||||| || || | | || | || || |||||||||| | Sbjct 44400630 TTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCGGC 44400689 Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361 | ||| ||||| ||||| || || ||||| ||||| |||||||| || || Sbjct 44400690 ATG--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATG 44400747 Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421 | || ||||| | || | || | || | |||||| || || | | |||| Sbjct 44400748 AGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATT 44400807 Query 21422 ATATTTATTATCCTAGATGTACTAGGG---GGATACAATAATTGTTTAAACATCAAACAT 21478 | | | ||| || | | | || | ||| | || || ||||||| || Sbjct 44400808 CTTTCTCTTACTCTCTCC-TCCAATGGTTTGTGTACCAGG--TGATTGAACATCAGGCAA 44400864 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 ||||||||||| || ||||| ||||| | ||| || | |||||| ||||| || | || Sbjct 44400865 GCAAAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCA 44400924 Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATG 21598 ||||| | ||||| || || | ||| ||||| || ||||| || |||||| ||| Sbjct 44400925 GGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATG 44400981 Query 21599 CCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATC 21658 || || | |||||||| | || | ||||| || || |||| | |||| ||| ||| Sbjct 44400982 CCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATC 44401041 Query 21659 CATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAA 21718 || | ||||| | |||||| | || | |||| || || ||||| || || || Sbjct 44401042 CAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAG 44401101 Query 21719 AGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCA 21778 || | |||| | ||| ||||| |||||||||| || Sbjct 44401102 CGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCA 44401161 Query 21779 GAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGA 21838 |||||||| ||||| || || || || || || | ||||| | || |||| ||| Sbjct 44401162 GAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGA 44401221 Query 21839 ACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAA 21898 || || | |||| | |||||||| |||||||||| |||||||| || ||||| Sbjct 44401222 ACTTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAG 44401280 Query 21899 AATGCCAATATATTTTTTATAAAATATC 21926 || ||| | || ||||||||||| Sbjct 44401281 AAAACCAGAACATGGGATATAAAATATC 44401308 Score = 89.7 bits (98), Expect = 5e-13 Identities = 291/455 (64%), Gaps = 3/455 (1%) Strand=Plus/Minus Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || ||||| | ||| || ||||| ||||| || || || | |||||| |||||||| | Sbjct 137949063 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 137949004 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAA 21595 || ||||| | |||| || || | ||| ||||| ||||| | || |||||||| Sbjct 137949003 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 137948944 Query 21596 ATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAAT 21655 ||| || || ||||| || | | ||||| || | ||| ||||| | | Sbjct 137948943 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 137948884 Query 21656 ATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTT 21715 ||||| |||| |||||| | || | ||| || |||| |||| || || Sbjct 137948883 ATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACAGGCA-TTGTTCCAATGGCATTG 137948825 Query 21716 AAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATT 21775 || ||| | |||| | ||| | ||| ||||| || Sbjct 137948824 AAGAGAAATTCCCTTTCTTTGTTATCTTTAATGTGTGTCAATAAGGAG--ACTATTTATG 137948767 Query 21776 TCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACAT 21835 ||||||||||| |||||| | || || || || || || || || | |||| | Sbjct 137948766 TCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATC 137948707 Query 21836 TGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCA 21895 |||| || | |||| ||| |||||||||||| |||||| ||||||| || ||| Sbjct 137948706 TGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGCA 137948647 Query 21896 AAAAATGCCAATATATTTTTTATAAAATATCGTTC 21930 || || |||| |||| ||||||||||| ||| Sbjct 137948646 AAGAAAGCCAGAATATAGGATATAAAATATCTTTC 137948612 >seq8 Length=144306982 Score = 104 bits (114), Expect = 2e-17 Identities = 125/169 (74%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 21100 TTTATTCAGCTTTATAAAAATAT-TTATTTAAAAATCAGCATCTAATGAGAAAACATTAT 21158 ||||| || |||| || || | || |||||||||| ||||| || | ||| ||||||| Sbjct 100922360 TTTATAGAGTTTTAAAACAAGAGGTTTTTTAAAAATCTGCATCCAAGGTGAAGACATTAT 100922419 Query 21159 CTTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAAT 21218 || ||| || ||||| | | | ||||| || ||||| ||| || || |||| Sbjct 100922420 CTGTGGTTTCTGCCATAACTGCAAAACGCTGATACTCCGAAACTCGTTTCTCAAAGAAAT 100922479 Query 21219 TTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 |||| |||||||| || || || ||||||||||||||| |||||||| Sbjct 100922480 TTGTTTTTCCTTCTAAAGAAATGTTTTCCATAAAATCAAAAGGATTTTC 100922528 >seq244122 Length=408 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| | |||||| | ||||| || | ||||| || || || || || ||||||| Sbjct 377 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTC 318 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTAC 21287 |||||| ||| ||| |||||||| |||||||| || || | | || | || || Sbjct 317 CTTCCAGTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAA 258 Query 21288 AACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCAC 21347 |||||||||| | | ||| ||||| ||||| || || |||| ||||| | Sbjct 257 AACCCAGTTCCGGCA--TGTCTGTCTGCCACAAACTCAATGTATTTCTTCATTAGAGTGC 200 Query 21348 AATTCATACCGATCAATTTTACAGG 21372 ||||||| || || | || ||||| Sbjct 199 AATTCATCCCAATTAGCTTCACAGG 175 >seq13 Length=108979918 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 10127115 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 10127056 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||||||||||| ||| ||| Sbjct 10127055 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 10126996 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| |||||||| || || Sbjct 10126995 TTCTCCATAAAGTCAAATGGGTTCTC 10126970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530007711862720