Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq166179 96.9 9e-15 seq14 96.9 9e-15 seq21 95.1 3e-14 >seq166179 Length=1001 Score = 96.9 bits (106), Expect = 9e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || || | || ||||| || || |||||| Sbjct 739 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAAACAGAAACAGGCACCCCATATATG 680 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 679 CTCTACAAAGATTCCTGTAATCGAAAGAGCAACCAGCAGAACCTGGGAACCATCAAATGC 620 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || |||||| Sbjct 619 AGCAACCTGTGCACAGAAATAGTGGAGTACACC 587 >seq14 Length=127894412 Score = 96.9 bits (106), Expect = 9e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || || | || ||||| || || |||||| Sbjct 63313964 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAAACAGAAACAGGCACCCCATATATG 63313905 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 63313904 CTCTACAAAGATTCCTGTAATCGAAAGAGCAACCAGCAGAACCTGGGAACCATCAAATGC 63313845 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || |||||| Sbjct 63313844 AGCAACCTGTGCACAGAAATAGTGGAGTACACC 63313812 >seq21 Length=149150640 Score = 95.1 bits (104), Expect = 3e-14 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||||||||| || | ||||| | |||| | | | | | | |||| Sbjct 44401070 AAGAAGAAGGCAGATTGGGCCTTGCACTGGATTGGGGACAAAGCAGCTACCTATGGGGAA 44401011 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-CAAT 22550 ||| || | | ||||||| | |||||||| ||||||||| |||||| | || Sbjct 44401010 CGTGTTGTAGTCTTTGCTGCAGCGGAAGGCAT---CTTTTCTGGTT-ATTTTGCATCGAT 44400955 Query 22551 CTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAG 22610 || ||||| || ||||| | | | ||||| || || || ||||| ||||| | ||||| Sbjct 44400954 ATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACCTTTTCCAATGAACTTATTAG 44400895 Query 22611 CCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 ||||||||||| | || |||||||| || Sbjct 44400894 TGGAGATGAGGGTTTACACTGTGATTTTGCTTG 44400862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1298598865057296