Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq11 98.7 9e-16 >seq11 Length=133663169 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| |||| |||||| ||| Sbjct 125065266 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 125065207 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | |||||| |||||| ||||| |||||||| ||||| || || Sbjct 125065206 GACACCATCGAGAACGTCAAAGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 125065147 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | ||| || || || ||||||| | | | | || || ||| Sbjct 125065146 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 125065087 Query 24171 ATTCAAAAAGAATCTAC 24187 || || ||||| ||||| Sbjct 125065086 ATCCAGAAAGAGTCTAC 125065070 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| |||| || ||| ||| Sbjct 125065038 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 125064979 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| |||||| ||||| |||||||| ||||| || || Sbjct 125064978 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 125064919 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| |||| | | ||| ||||| || ||||||| Sbjct 125064918 CAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATG 125064882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428444069412840