Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq182031 131 1e-25 seq261797 127 1e-24 seq59696 127 1e-24 seq20 127 1e-24 seq1 127 1e-24 seq21 125 5e-24 seq8 118 7e-22 seq7 116 2e-21 seq6 100 2e-16 seq15 96.9 2e-15 seq215977 95.1 8e-15 seq16 93.3 3e-14 seq60496 87.8 1e-12 seq19 82.4 5e-11 >seq182031 Length=4412 Score = 131 bits (144), Expect = 1e-25 Identities = 75/77 (97%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1629 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 1570 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 1569 GGTCATATTTAGCCTTA 1553 >seq261797 Length=48357 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 13731 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 13790 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 13791 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 13825 Score = 102 bits (112), Expect = 5e-17 Identities = 71/79 (90%), Gaps = 5/79 (6%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG- 20005 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 17130 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 17189 Query 20006 -CGGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 17190 CCGG---TATTTAGCCTTA 17205 >seq59696 Length=43319 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 1642 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 1701 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1702 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1736 >seq20 Length=74971481 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 23854752 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 23854693 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 23854692 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 23854658 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| |||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 19426130 AAGCACGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 19426189 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 19426190 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 19426224 >seq1 Length=225584828 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 174996570 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 174996511 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 174996510 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 174996476 >seq21 Length=149150640 Score = 125 bits (138), Expect = 5e-24 Identities = 83/92 (90%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 25905 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAA 25959 ||||||||||||||||||||||||||||||||||| ||||| || ||||||||| | Sbjct 89603403 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCA 89603344 Query 25960 TCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| |||||||||||||||||||||||||||| Sbjct 89603343 TCCATTCATGCGCGTCACTAATTAGATGACGA 89603312 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 58512028 AAGCCTGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 58511969 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| ||||| |||||||||||||||||||||| Sbjct 58511968 GCATCCATTCATACGCGTCACTAATTAGATGACGA 58511934 Score = 105 bits (116), Expect = 4e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||||| | ||||||||| |||||||||||| ||| | ||||||||| |||| |||| Sbjct 2777390 CAACAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCGTC 2777331 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| | || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 2777330 TTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2777271 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | |||||| ||||| || | || ||||| Sbjct 2777270 CTGGATCTTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAATCTCAAGGGTGATAGT 2777211 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||| | | |||||||||||| |||||||| || Sbjct 2777210 CTTCCCCCTTAGGGTTTTCACGAAAATCTGCATTTT 2777175 >seq8 Length=144306982 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||||||| ||| ||||||| |||||| || |||||||| Sbjct 93154635 AAGCCAGTTCCCTTGGCTGTGGTTTTGCTGGATAGTATATAGGGACAGTGGGAATCTCGT 93154694 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 93154695 TTATCCATTCATGCGCGTCACTAATTAGATGACGA 93154729 Score = 114 bits (126), Expect = 9e-21 Identities = 81/93 (87%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| ||||||| ||| |||||||| ||||| || |||||||| Sbjct 85412759 AAGCCCGTTCCCTTGGCAGTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 85412700 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||||||||||||||||||||||| Sbjct 85412699 TCATCCATTCATGCGCGTCACTAATTAGATGAC 85412667 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||||||||| ||||||||| |||| | || Sbjct 73239622 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 73239681 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| || | | || | ||||| || || Sbjct 73239682 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAGAGCAGGAGGAATTCCTTCCTTCTC 73239741 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA-CTTTCAACTTCTAATGTAATAG 38283 | || || ||| ||||| | | |||| || | |||||| || | || || | Sbjct 73239742 CTGGATCTTGGCCTTTACATTTTCTATCGTAT-TCGAGGGTTCAACCTCGAGGGTGATGG 73239800 Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || ||||| | |||||||||||| |||||||| || Sbjct 73239801 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 73239837 >seq7 Length=169600520 Score = 116 bits (128), Expect = 2e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||||||||| ||||||||| |||| | || Sbjct 127523807 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 127523748 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 127523747 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 127523688 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | |||| |||||| || | || || || Sbjct 127523687 CTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAACCTCGAGGGTGATGGT 127523628 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || ||||| | |||||||||||| |||||||| ||| Sbjct 127523627 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTT 127523591 >seq6 Length=180051392 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || || ||||||||||||||||||| ||| |||| ||| ||||| || |||||||| Sbjct 65575515 AAACCTGTTCCCTTGGCTGTGGTTTTGCTGGATATTAGGTAGGGACAGTGGGAATCTCGT 65575456 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| ||||||||||||||||| || Sbjct 65575455 TCATCCATTCATGCACGTCACTAATTAGATGATGA 65575421 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 ||||||||||||||||||||||||||||||| | ||||| |||| |||| |||||| || Sbjct 121076607 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACGTGTTGACTATTGGTCTCACG 121076548 Query 20008 GTAATATTTAGCCTTA 20023 | ||||||||| || Sbjct 121076547 CCAGTATTTAGCCATA 121076532 >seq15 Length=111343173 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||||||||| ||||||||| |||| | || Sbjct 72888107 CAACACGAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 72888166 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | |||| || || Sbjct 72888167 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTTCTTATC 72888226 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || | || ||||| | | |||||| |||| | || | || || || Sbjct 72888227 CTGGATCTCGGCCTCTACATTTTATATCGTATCTGAGGGTTCAGCCTCGAGGGTGATGGT 72888286 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||| | | |||||||| ||| |||||||| || Sbjct 72888287 CTTCCCCATAAGGGTTTTCATGAAAATCTGCATTTT 72888322 >seq215977 Length=71339 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||||||||| |||||||||||| ||||| || ||||| || |||||| | Sbjct 20785 AAGCCTGTTCCCTTGGGTGTGGTTTCGCTGGATAGCAGGTAGGGACAGTGGCAATCTCAT 20844 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||| |||||||||||| ||| || Sbjct 20845 TCATCCATTCATGCGAGTCACTAATTAGTTGAGGA 20879 >seq16 Length=77216781 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| |||| |||| || || || |||||| || || ||||| |||| Sbjct 16306183 TACCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAG 16306242 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | || || || ||||| || || | || || |||| | Sbjct 16306243 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAG 16306302 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||| ||| || || ||||||||| | || || || | || | Sbjct 16306303 GGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCA 16306362 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || || || || |||| ||| |||||||| |||||||| Sbjct 16306363 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16306411 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| |||| |||| || || || |||||| || || ||||| ||||| Sbjct 16305957 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAA 16306016 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | || || || ||||| || || | || || |||| |||| Sbjct 16306017 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 16306076 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||| || || || ||||||||| | || || || | || || Sbjct 16306077 ATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 16306136 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || |||| |||||||||||| |||||||| Sbjct 16306137 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 16306183 >seq60496 Length=734 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 ||||||||||||||||||||||||||||||| | ||||| |||| |||| |||||| || Sbjct 140 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACGTGTTGACTATTGGTCTCACG 81 Query 20008 GTAATATTTAGCCTTA 20023 | ||||||||| || Sbjct 80 CCAGTATTTAGCCATA 65 >seq19 Length=53671032 Score = 82.4 bits (90), Expect = 5e-11 Identities = 72/88 (82%), Gaps = 5/88 (6%) Strand=Plus/Plus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG--GT---AATCTCGTTAATCCT 25963 |||| |||||||||||||| || ||||| || ||||| || ||||||||| |||| Sbjct 22439242 TTCCTTTGGCTGTGGTTTCACTGGATAGCAGGTAGGGACAGTGAGAATCTCGTTCATCCA 22439301 Query 25964 TTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| ||| ||||||||||||||| || Sbjct 22439302 TTCATACGCCTCACTAATTAGATGAGGA 22439329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333784892184968