Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5 87.8 2e-12 >seq5 Length=190429646 Score = 87.8 bits (96), Expect = 2e-12 Identities = 127/177 (72%), Gaps = 8/177 (5%) Strand=Plus/Plus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 ||| || ||||| || ||||| ||||| | | || ||| ||||||| | || || | Sbjct 87219422 ACGCAAACATGCAGATCTTTGTGAAGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCG 87219481 Query 25051 AGTCGTCTGACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATT 25106 || | |||||| || ||| ||| |||| |||| ||| ||||| || || || Sbjct 87219482 AGCCCAGTGACACCATTGAGAACGTCA---AAGCCAAAATTCAA-GACAAGGAGGGTATC 87219537 Query 25107 CCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 ||||||||||| ||||| | || |||||| ||||||| | ||||||| |||||| Sbjct 87219538 CCACCTGACCAGCAGCGTCTGATATTTGCCAGCAAACAGCTGGAAGATGGCCGCACT 87219594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431824298757320