Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq21 248 1e-60 seq13 100 3e-16 seq240756 84.2 2e-11 >seq21 Length=149150640 Score = 248 bits (274), Expect = 1e-60 Identities = 526/783 (67%), Gaps = 4/783 (1%) Strand=Plus/Plus Query 92923 TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACG 92982 ||| || || ||||| || ||||| || ||| | | |||||||| || | || Sbjct 44400693 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 44400752 Query 92983 TACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042 ||||| | || || || | ||| || | || || ||| || | | | |||| Sbjct 44400753 CACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTCTTTC 44400812 Query 93043 TATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTC 93102 | ||||||| | |||||| ||||| | | |||| |||| | ||| ||||| || Sbjct 44400813 TCTTACTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAATC 44400872 Query 93103 GGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAG 93162 |||||||| || |||| || | |||||| || || | || || | ||| Sbjct 44400873 ACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAG 44400932 Query 93163 TCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCAC 93222 |||||||||||||||||| ||||| || |||||| ||||||||| | | |||||| | Sbjct 44400933 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCCGC 44400989 Query 93223 GGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAA 93282 || ||||| | |||| |||||| || | | || | || | ||||| | || Sbjct 44400990 TGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATCCAGTGCAA 44401049 Query 93283 AGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 |||||||| || || ||||| | |||||| | ||||| || || || || | | || Sbjct 44401050 GGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATTC 44401109 Query 93343 TCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGAC 93402 | || | | |||| |||||| || || || | | | ||||||| ||||||| | Sbjct 44401110 CCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAATGTAT 44401169 Query 93403 ATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || ||||| ||||||||||| || ||||||| | ||||| || | ||| |||||||| Sbjct 44401170 GTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTTG 44401229 Query 93463 AGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAA 93522 | ||| ||| || | ||| |||| ||||| ||||| ||| ||||| ||| ||| Sbjct 44401230 GCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAAACCAG 44401288 Query 93523 TATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTT 93582 | ||| |||||||| | |||| || || || ||||| | | | || || Sbjct 44401289 AACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGAATTCCCAGTGCCAAATGTCCTT 44401348 Query 93583 TGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCA 93642 || | || || || ||| | ||||| || || ||||| || || || ||||| | ||| Sbjct 44401349 GGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGCCA 44401408 Query 93643 TATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGG 93702 || || || || | || || || ||||||||||| ||||| ||| | || | ||| Sbjct 44401409 GATATCATGGTACTCGATGGGGAAGATGACAAAACGGCAGGGGTTTTCTCTCAGCAGCGG 44401468 Query 93703 CTC 93705 ||| Sbjct 44401469 CTC 44401471 Score = 136 bits (150), Expect = 4e-27 Identities = 371/563 (66%), Gaps = 5/563 (1%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTA 93149 ||| ||||||| |||||||| || || | || || || | ||||| ||||| | Sbjct 137949064 GCAAGCAAAGTAACAGTGTAAACCCTCATCAC-TGCTAATAAGTTCATTGGAAAATGTGA 137949006 Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209 || || | ||||||| ||||||||||||| ||||| |||||| ||||||||| | Sbjct 137949005 GGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGA 137948946 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC 93269 | | | |||||| ||||| || ||| |||||| || | || || | | Sbjct 137948945 AGGTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCC 137948886 Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 ||||| || ||||| | || || ||||| | ||| || | |||| | || || | Sbjct 137948885 CAATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTCCAATGGCAT 137948827 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 | || || | || | || | |||| |||| ||| | || | ||| || | Sbjct 137948826 TGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATGTGTGT--CAATAAGGAGACTATTTA 137948769 Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 | |||||||| | || || | ||||||||||| || ||||| || | ||| || | Sbjct 137948768 TGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAA 137948709 Query 93450 TCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 |||| | ||||||| |||| || || | ||||||| ||||| ||||| |||||| Sbjct 137948708 TCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTG 137948649 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT 93569 |||| ||||||| |||| |||||||| | | || ||| || || ||||| | Sbjct 137948648 CAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCAGT 137948589 Query 93570 CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTT 93629 | | || || || |||| || || | | | |||| || || | ||| |||| | Sbjct 137948588 GCCAAATGTCCTTGGACAGATTCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTTTCT 137948529 Query 93630 TGTACATATCCCATATGTCTTGA 93652 | ||| | | ||| || || ||| Sbjct 137948528 TATACGTTTTCCAAATATCATGA 137948506 >seq13 Length=108979918 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || || | ||||||||||||||||||||| ||||| || ||| Sbjct 10124938 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 10124879 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||| ||||| || || |||||||| || ||||| || |||| |||||| Sbjct 10124878 AAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACAACACGTTC 10124826 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 |||| |||||| || || || | ||| ||||||||||||||| | || ||||| || Sbjct 10122854 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 10122795 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||||||| || |||||||| | ||||| || ||||| |||||||| ||||| ||| Sbjct 10122794 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 10122735 Query 93475 TAC 93477 || Sbjct 10122734 CAC 10122732 >seq240756 Length=574 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCG 126323 ||||||| |||||||||||||||||||||||||| | ||| |||||| ||| Sbjct 490 CAGTCAGTTTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTGGAGAAATCCGCG 549 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 550 TGGGTTCGAACCCCACAGCTGACA 573 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/91 (79%), Gaps = 14/91 (15%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG-- 126321 ||||||| |||||||||||||||||||||||||| | ||| |||||| |||| Sbjct 299 CAGTCAGTTTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT-------GGAGAA 351 Query 126322 -----CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||| |||||| Sbjct 352 ATCCTCGTGGGTTCGAACCCCACAGCTGACA 382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554878876726720