Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5 131 1e-25 seq2 129 5e-25 seq7 122 7e-23 seq15 116 3e-21 seq8 105 6e-18 seq11 98.7 8e-16 seq20 82.4 6e-11 >seq5 Length=190429646 Score = 131 bits (144), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || ||||| || || | | || ||||| |||| ||||| || || | Sbjct 87219426 AAACATGCAGATCTTTGTGAAGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCGAGCC 87219485 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || || ||| | || | ||||| ||||||||||||||||||||||| ||||| || Sbjct 87219486 CAGTGACACCATTGAGAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGA 87219545 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCA--CCGTCTCCGAT 22392 || || ||||| ||||||||| |||||||| | || ||| ||||| | |||| || Sbjct 87219546 CCAGCAGCGTCTGATATTTGCCAGCAAACAGCTGGAAGATGGCCGCACTCTCTCTCAGAC 87219605 Query 22393 TACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGG 22442 |||||||| | |||| |||||| | || | || ||||| |||| || Sbjct 87219606 TACAACATCC---AAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGG 87219652 >seq2 Length=204787373 Score = 129 bits (142), Expect = 5e-25 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||||||||| || | ||| Sbjct 184232288 AGATGCAGATCTTTGTGAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCAAGCCCA 184232347 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || ||| ||||| ||||||||||||||||||||||| ||||| || | Sbjct 184232348 GTGACACCAATGAGGATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACC 184232407 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| ||| |||||||||||||| | |||||| ||| || |||| || ||| Sbjct 184232408 AGCAGCATCTGATACTTGCCGGCAAACAGCTGGAGGATGGCCGAACTCTCTCAGACTACG 184232467 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGG 22442 |||| |||| |||||| | || | || |||| |||| || Sbjct 184232468 ACATCTGGGAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGG 184232513 >seq7 Length=169600520 Score = 122 bits (134), Expect = 7e-23 Identities = 150/204 (74%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||| ||||| | || ||| Sbjct 120107562 AGATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGATTGAGCCCA 120107621 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGG-TATTCCACCCGAT 22335 || ||| | | || ||||| |||||||||||||||||||| ||| | ||| || Sbjct 120107622 GTGACACCATTTAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGATATCCTACCTGAC 120107681 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| ||| |||| || |||||| | |||||| |||||| |||| | ||| Sbjct 120107682 CAGCAGCGTCTGATACTTGCTGGGAAACAGCTGGAGGATGGCCGCACTCTCTCAGGCTAC 120107741 Query 22396 AACATTCAAAAAGAATCCACCATA 22419 ||||| || ||||| |||||| || Sbjct 120107742 AACATCCAGAAAGAGTCCACCCTA 120107765 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || | ||| || || | || || | ||| |||| |||| || | ||| Sbjct 82646435 ATGCAGATCTCTGTAAAGACCCTCACAGGAAGAACCATCACCTTTGAGGTCCAGCCCAGT 82646494 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| || || ||||| || || || ||||||||||| || ||||| || || Sbjct 82646495 GACACCAGTGAAAATGTCAAAGCCAAGATCCATGACAAGGAGGGCATCCCACCTGACCAG 82646554 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||| ||||||| ||||||||||| |||||| || ||| | || ||||| ||| Sbjct 82646555 CAGCATCTGATATTTGTGGGCAAACAGTTGGAGGATGGCCACACTCTTTCAGATTATAAC 82646614 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| |||||| Sbjct 82646615 ATCCACAAAGAGTCCACC 82646632 >seq15 Length=111343173 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| | ||||| | || | || || || || ||| ||||| || || ||| Sbjct 61914166 ATGCAGCTCTTTGTGGAGACCCTCACGGGCAAGACCATCATCCTTGAGGTCGAGCCCAGT 61914107 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 | ||| || || ||||| |||||||||||||| |||||||| ||||| || || Sbjct 61914106 TACACCACTGAGAATTTCAAAGCCAAAATTCAAGACAAAGAGGGTATCCCACCTGACCAG 61914047 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||| |||||||| ||||| ||| | |||||| | |||| |||| || |||||| Sbjct 61914046 CAGTGTCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCTGCACTCTCTCAGACTACAAC 61913987 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGC 22432 || |||||| | |||||||| || | ||| ||| Sbjct 61913986 ATCCAAAAACAGTCCACCATGCACCTGGTTCTGC 61913953 >seq8 Length=144306982 Score = 105 bits (116), Expect = 6e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 |||||||||||||||||||| || ||||| || || || | ||| ||| |||| |||||| Sbjct 122436130 AAAATTCAAGACAAGGAGGGCATCCCACCTGACCAGCAGCATCTGATACTTGCGGGCAAA 122436189 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| | |||| |||| || |||||||| || ||||| ||||| Sbjct 122436190 CAGCTGGAGGATGGCTGCACTCTCTCAGACTACAACATCCAGAAAGAGTCCAC 122436242 >seq11 Length=133663169 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || ||||||| || ||||| ||| Sbjct 125064355 GATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTGGAGCCCAG 125064296 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || || |||| ||| || || || ||||| || || || || || || Sbjct 125064295 CGACACCATTGAGAATGTCAAGGCAAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCA 125064236 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| || |||||| | || ||| |||||| | || || ||||| Sbjct 125064235 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 125064176 Query 22398 CATTCAAAAAGAATCCACC 22416 |||||| ||||| |||||| Sbjct 125064175 CATTCAGAAAGAGTCCACC 125064157 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || |||| ||||| ||||| ||| Sbjct 125064811 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCCAG 125064752 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || || |||| ||| || || ||||||||||| || || || || || Sbjct 125064751 TGACACTATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCA 125064692 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| || || ||| | || ||| |||||| | || || ||||| Sbjct 125064691 GCAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 125064632 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| |||||| Sbjct 125064631 CATCCAGAAAGAGTCCACC 125064613 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || |||| || || || || ||| Sbjct 125065267 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 125065208 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | ||||| ||| || ||||||||||| || || || || || || Sbjct 125065207 TGACACCATCGAGAACGTCAAAGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 125065148 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || |||||||| |||||| | || ||| |||||| | || || ||||| Sbjct 125065147 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 125065088 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| || ||| Sbjct 125065087 CATCCAGAAAGAGTCTACC 125065069 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || |||| || || ||||| ||| Sbjct 125064583 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 125064524 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || || |||| ||| || || ||||||||||| || || || || || Sbjct 125064523 TGACACTATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCA 125064464 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| || || ||| | || ||| |||||| | || || ||||| Sbjct 125064463 GCAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 125064404 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| |||||| Sbjct 125064403 CATCCAGAAAGAGTCCACC 125064385 >seq20 Length=74971481 Score = 82.4 bits (90), Expect = 6e-11 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTAT-ATTTGCCGGCAA 22361 ||||||||||||||| |||| || | ||| || || || |||| || ||||| | ||| Sbjct 32107717 AAAATTCAAGACAAGTAGGGCATCCTACCTGACCAGCAGTGTCTGATAATTTGAGGTCAA 32107658 Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 | | | |||||| |||||| |||| || |||||||| || ||||| |||||| Sbjct 32107657 ATCGCTGGAGGATGGCCGCACTCTCTCAGACTACAACATCCAGAAAGAGTCCACC 32107603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418271492423320