Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq21 118 2e-21 seq13 87.8 3e-12 seq8 84.2 4e-11 >seq21 Length=149150640 Score = 118 bits (130), Expect = 2e-21 Identities = 384/585 (66%), Gaps = 16/585 (3%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 |||||| |||| || |||||| ||||| ||||||||| | ||| |||||||||| Sbjct 44401426 ATCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCC 44401367 Query 42345 GAGGAGATTGACCTGGCCAAGGACAC--GGCCGGCTGGGAGTCACTGT---CTGAGAACG 42399 |||||| | |||| | ||||||||| ||| |||||| | ||| | ||| | | Sbjct 44401366 GAGGAGGTGGACCCGTCCAAGGACATTTGGCA--CTGGGAATTCCTGAAGCCCGAGGA-G 44401310 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | | |||| || | | |||| ||||| || || ||| |||||||| |||| Sbjct 44401309 AGATATTTTATATCCCATG--TTCTGGTTTTCTTTGC-GCAAGTGATGGCATAGTAAATG 44401253 Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACG 42519 ||| ||| | | | |||| || ||| || || ||||| |||| | Sbjct 44401252 CAAACTTGGTGGAGCGATGTAGCCAAGAAGTTCAGGTGACAGAAGCCCGCTGTTTCTGTG 44401193 Query 42520 GCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGT 42579 ||||||| || ||||| || ||| | || |||| |||| || | |||| | Sbjct 44401192 GCTTCCAAATTGCCATGGAAAACATACATTCTGGAATGTATAGTTTCCTTATTGACACTT 44401133 Query 42580 ACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA 42639 |||| |||||| || | | | ||||| ||||| || |||||||| || Sbjct 44401132 ACATAAAAGATCCCAAAGAAAGGGAATTTCGCTTCAATGCCATTGAAACGATGCCTTGTG 44401073 Query 42640 TCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCG 42699 ||||||||||||| || ||||| | ||||||| | | | || || | || | Sbjct 44401072 TCAAGAAGAAGGCAGATTGGGCCTTGCACTGGATTGGGGACAAAGCAGCTACCTATGGGG 44401013 Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759 | | | |||| |||| | || | || |||||||| |||| || || || || | Sbjct 44401012 AACGTGTTGTAGTCTTTGCTGCAGCGGAAGGCATCTT-TTCT--GGTTATTTTGCATCGA 44400956 Query 42760 TCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 | |||||||||||| | ||| | |||||| || |||||||| || || ||||| || Sbjct 44400955 TATTCTGGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACCTTTTCCAATGAACTTATT 44400897 Query 42819 AGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 || | || ||||| | || | || ||||| ||||| ||||| Sbjct 44400896 AGTGGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTC 44400852 >seq13 Length=108979918 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| |||| || || ||||||||||| || || | || || || || |||||| Sbjct 10124835 GTAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGG 10124894 Query 42768 CTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | ||| | |||||| || ||||| || || || ||||| |||||||| || Sbjct 10124895 CTCAAGAAACGAGGACT-GATGCCTGGCCTCACATTTTCCAATGAACTTATCAGCAGAGA 10124953 Query 42827 CGAGG 42831 |||| Sbjct 10124954 TGAGG 10124958 >seq8 Length=144306982 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | || || || || || |||||||| || | || || | || |||| Sbjct 100933506 TGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCAGGATCTTTTGCTGCTATATTCT 100933447 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| |||| | ||||| |||||||| || || || |||||||||||||| Sbjct 100933446 GGCTAAAGAAGAGAGGTCTT-ATGCCAGGACTCACTTTTTCCAATGAACTCATCAGCAGA 100933388 Query 42825 GACGA 42829 || || Sbjct 100933387 GATGA 100933383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 940978202353280