Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq42160 313 1e-80 >seq42160 Length=2059 Score = 313 bits (346), Expect = 1e-80 Identities = 850/1278 (67%), Gaps = 31/1278 (2%) Strand=Plus/Minus Query 15995 ATGACCCGGCAGTACAGCGTCCGTTGCGTCAGACCCGCACCCGTAAGCCGTTCCCTGAAT 16054 ||||||||||| | | || ||| |||| ||| | | |||| || ||| | || | | Sbjct 1977 ATGACCCGGCACTCCCGCAGCCGCTGCGCCAGTCTTCCGCCCGCAAACCGCTGCCGGCCT 1918 Query 16055 CACTACCCCGTGACGAAAAGCGA---CTGTTGCCTGCGGCGCCGTGCTGCCCGAACTGCG 16111 |||| ||||| ||||| | |||| ||| || | | ||| ||| |||| Sbjct 1917 CACTTCCCCG---CGAAACCCTCACGCTGTCGCCGGCAGAAACCACCTGTCCGGCATGCG 1861 Query 16112 GCGGTTCACTGAGCTATCTGGGCGAGGA--TACCGCCGAACAGCTGGAGTTGATGCGTAG 16169 |||| ||| | | |||||| || || || || ||||||||| | || | || Sbjct 1860 GCGGCGAACTCAACGCGCTGGGCTGCGACGTATCG--GAGCAGCTGGAGCTTATCAGCAG 1803 Query 16170 CGCCTTCCGGGTTATCCGGACGGTACGGGAAAAACATGCCTGTACT-CAG-TGCGATGCC 16227 |||||| ||||||| ||| ||| || | ||||| || ||| || || | Sbjct 1802 CGCCTTTAAGGTTATCGAAACGCAGCGGCCGAAGCTGGCCTG--CTGCAGCTGTGACCAC 1745 Query 16228 ATCGTGCAGGCACCTGCACCTTCGCGGCCCATCGAGCGGGG-TATCGCCGGACCGGGGCT 16286 ||||| ||||| | || || |||||||| || | ||| || || || || || Sbjct 1744 ATCGTTCAGGCTTCCATGCCGTCAAAACCCATCGAACGCAGCTAT-GCGGGCCCCGGCCT 1686 Query 16287 GCTGGCCCGCGTGCTGACCTCGAAGTATGCAGAGCACACCCCGCTGTATCGCCAGTCAGA 16346 |||||| ||| | | || |||||| ||||||||||| || ||||| |||||||| Sbjct 1685 GCTGGCGCGCATCGTCACGGCGAAGTTCGCAGAGCACACGCCTGACTATCGTCAGTCAGA 1626 Query 16347 AATATACGGCCGGCAAGGTGTGGAGCTGAGGCGTTCACTGCTGTCGGGCTGGGTGGATGC 16406 |||||| || || || ||||||||||| || | |||| ||||| | || Sbjct 1625 GATATACCATCGTCAGGGCGTGGAGCTGAGTCGCGCCACGCTGGGTCGCTGGTCCGGCGC 1566 Query 16407 ATGCTGCCGGCTGCTGTCTCCGCTGGAAGAGGCGCTTCATGGCTATGTCATGACTGACGG 16466 || |||||| |||||| | | ||| | || || ||| || ||| Sbjct 1565 GGTGAGCGAACTGCTGGAGCCGCTGTACGGCCTGCTGCGCCAGTACGTGCTGA-TGCCGG 1507 Query 16467 -CAAACTCCATGCCGATGATACCCCGGTCCAGGTACTGCTGCCGGGTAATAAGAAGACGA 16525 ||| | || |||| |||| ||| || | ||||| | |||||| | || ||| Sbjct 1506 GCAAGGTGCACACCGACGATATCCCTGTGCCGGTACAGGAGCCGGGCAGCGGTAAAACGC 1447 Query 16526 AGACCGGGCGGTTGTGGGCGTATGTTCGTGATGACCGCAATGCAGGGTCAGCGTTGGCAC 16585 || | ||| |||||| || || || || |||||||| || || ||| | | || Sbjct 1446 GCACGGCCCGGCTGTGGGTATACGTGCGGGACGACCGCAACGCGGGCTCACAGCTTCGAC 1387 Query 16586 CTGCAGTGTGGTTCGCTTACAGCCCGGACAGAAAAGGCATCCATCCGCAGACTCATCTTG 16645 | || || |||||||| ||| |||||| | |||||| | ||||| ||| || |||| Sbjct 1386 CGGCGGTCTGGTTCGCGTACTCGCCGGACCGGAAAGGCGTACATCCACAGCGGCACCTTG 1327 Query 16646 CCTGCTTCAGCGGTGTGCTGCAAGCGGATGCGTACGCCGGGTTCAACGAGCTGTATCGCA 16705 | | | ||||||| | ||||| ||||| || |||| || | || | |||||| || | Sbjct 1326 CGGGGTACAGCGGTATCCTGCAGGCGGACGCTTACGGTGGTTATAATGCGCTGTA-CGAA 1268 Query 16706 -ATGGTGGGATAACGGAAGCTGCCTGCTGGGCTCATGCCCGCCGAAAGATCCACGATGTG 16764 |||| | ||||| ||||| |||||| ||| || ||||| ||||| |||||||| ||| Sbjct 1267 GATGGCCGCATAACCGAAGCAGCCTGCATGGCGCACGCCCGGCGAAAAATCCACGACGTG 1208 Query 16765 CACGTCCGCATCCCGTCAGCACTGACGGAAGAAGCCCTGGAGCAGATCGGTCAGTTGTAC 16824 || | ||| | ||| | | | || ||||| ||| ||| ||||| || |||| Sbjct 1207 CATGCCCGGACACCGACCGACATCACAACCGAAGCGCTGAAGCGTATCGGAAAGCTGTAT 1148 Query 16825 GCCATAGAGGCGGATATAAGGGGAATGCCGGCAGAGCAGCGGCTTGCTGAACGTCAGCGA 16884 ||||| ||||| || ||| | || | |||||||| ||||||| || | |||| | Sbjct 1147 GCCATCGAGGCTGAGATACGCGGCAGCCCGGCAGACGAGCGGCTGGCGGTACGTAAAGAG 1088 Query 16885 AAAACGAAACCGTTGTTGAAATCCCTGGAAAGCTGGTTGCGTGAAAAGATGAAGACCCTG 16944 | || | ||||| || | || ||| | |||| | | | |||||||| ||| Sbjct 1087 CAGACTATCCCGTTAATGCAGTCACTGTACGACTGGATACAGGTTCAGATGAAGGTACTG 1028 Query 16945 TCGCGACACTCAGAGTTGGCGAAGGCGTTCGCGTACGCACTTAACCAGTGGCCGGCACTG 17004 ||||| ||||| || ||||||||||||||| || ||| || |||||| || | Sbjct 1027 TCGCGCCACTCGGACACGGCGAAGGCGTTCGCCTATCTACTGAAGCAGTGGGACGCGTTA 968 Query 17005 AC---GTACTATGCGAACGATGGCTGGGTGGAAATCGACAACAACATCGCTGAAAATGCC 17061 | ||||| || | | ||||||||| ||| ||||||||||| ||||| || || || Sbjct 967 AACCTGTACT--GC-AGCAATGGCTGGGCGGAGATCGACAACAATATCGCGGAGAACGCG 911 Query 17062 CTGCGGGCGGTCAGTCTGGGTCGTAAAAACTTCCTGTTCTTCGGCTCTGATCATGGTGGT 17121 ||||| | || ||||| || ||||||| |||||| ||| || ||| || || Sbjct 910 CTGCGTGGCGTAGCCCTGGGCCGGAAAAACTGGCTGTTCGCCGGTTCAGATACAGGCGGA 851 Query 17122 GAGCGGGGAGCGCTACTGTACAGCCTGATCGGGACGTGCAAACTGAATGACGTGGATCCA 17181 || || | ||| | || ||| ||||||| || ||| || || | ||| || || Sbjct 850 GAACGTGCGGCGATCCTCTACTCTCTGATCGTCACCTGCCGGCTTAACGGCGTTGACCCC 791 Query 17182 GAAAGCTACCTTCGCCATGTGCTTGGCGTCATA-GCA-GACTGGCCGGTCAACC-GGGTC 17238 || | | | || | || | | |||||| || ||||||||||| |||| ||||| Sbjct 790 GAGACGTGGTTGCGTTACGTCATCG--GTCATATACAGGACTGGCCGGTGAACCTGGGTC 733 Query 17239 AGCGAACTGCTTCCGTGG 17256 |||| ||||| || ||| Sbjct 732 CGCGATCTGCTGCCATGG 715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198076801488624