Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq11 116 4e-21 seq7 104 2e-17 seq16 95.1 1e-14 seq8 95.1 1e-14 seq15 82.4 7e-11 >seq11 Length=133663169 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| || || ||||| ||| || ||||| |||||| Sbjct 125064386 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCA 125064445 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | |||||| || ||||| ||||||||||||||| ||| || |||| Sbjct 125064446 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 125064505 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | ||||| | ||| || |||| ||| | || ||||| ||||| || Sbjct 125064506 ACATTTTCAATAGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 125064565 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 125064566 TTCACGAAGATCTGCAT 125064582 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | ||||||||||| || || ||||| || || ||||| ||| || Sbjct 125065057 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTC 125065116 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 |||||||| || || ||||||| | |||||| || ||||| ||||| |||||||| Sbjct 125065117 CAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTG 125065176 Query 127024 GATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 ||| || ||| |||| | |||| |||||| | |||||| |||| ||| | || | Sbjct 125065177 GATCTT-TGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCT 125065235 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||||| || || || || |||||||| Sbjct 125065236 TGCCAGTCAGGGTCTTCACGAAGATCTGCAT 125065266 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | || |||||||| || || ||||| || || ||||| ||| || Sbjct 125064601 CACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 125064660 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| |||||||| ||||||| | |||||| || ||||| ||||||||||||||| Sbjct 125064661 CAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 125064720 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||||| | ||| | ||||| | ||| || || | ||| | || || Sbjct 125064721 GATCTTTGCCTTGACATTTTCAATAGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTT 125064780 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||||| || || || || |||||||| Sbjct 125064781 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 125064810 >seq7 Length=169600520 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | |||||||| |||||||||||||| || Sbjct 127523824 GCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCA 127523765 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || || || || ||||| |||||| || |||||||| ||| Sbjct 127523764 GACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGA 127523705 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | | |||| || Sbjct 127523704 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCA 127523645 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || ||||| || ||||||||||| Sbjct 127523644 ACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 127523595 >seq16 Length=77216781 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| || | ||||| ||| || ||||| || || Sbjct 16306443 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 16306502 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | | |||||| ||||| || ||||| ||||| ||| |||||| ||| Sbjct 16306503 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTC 16306562 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||||| |||||| | ||| || || | ||| | || ||||||||||| || Sbjct 16306563 ACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTC 16306622 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 16306623 TTCACGAAGATCTGCAT 16306639 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || | ||||| | Sbjct 16306197 CGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 16306256 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| |||||||| ||||| || || Sbjct 16306257 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTA 16306316 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | ||||| |||||| | ||| ||||| | ||| | Sbjct 16306317 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 16306376 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| || || || || |||||||| Sbjct 16306377 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16306411 Score = 82.4 bits (90), Expect = 7e-11 Identities = 154/226 (68%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 126888 CACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCA 126947 |||| || | || ||| || ||||| | ||||||||||||||||||||||| | || Sbjct 10305048 CACCACGAAGTCTCAATACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGT----CA 10304993 Query 126948 TCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTA 127007 || || ||| || || || || ||||| ||||| || |||| || | ||||| | Sbjct 10304992 AAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTCTGCCGACCAGGAGGAA 10304933 Query 127008 TGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTT 127067 | || ||||| || ||| || || | | ||| | ||||||| || | | Sbjct 10304932 TTCCTTCCTTAACCTGGATCTTGGCCTATACATTTTCTATTGTGTCCGAGGGTTCACCCT 10304873 Query 127068 CGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||| | || || || || || ||| | || ||||||||||| Sbjct 10304872 CGAGGGTGATGGTCTTCCCTGTAAGGGTTATCACGAAAATCTGCAT 10304827 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || | ||||| | Sbjct 16305969 CGCAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 16306028 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| ||||| || ||||| || || Sbjct 16306029 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTA 16306088 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||| | | ||||| |||||| | ||| || || | ||| | Sbjct 16306089 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 16306148 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| ||||| || || |||||||| Sbjct 16306149 GTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 16306183 >seq8 Length=144306982 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | |||||||| |||||||||||||| || Sbjct 73239605 GCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCA 73239664 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || || || || ||||| |||||| || ||| || | ||| Sbjct 73239665 GACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAGAGCAGGA 73239724 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | || | || || Sbjct 73239725 GGAATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTATTCGAGGGTTCA 73239784 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || ||||| || ||||||||||| Sbjct 73239785 ACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 73239834 >seq15 Length=111343173 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | |||||||| |||||||||||||| || Sbjct 72888090 GCACCACCACGAAGTCTCAACACGAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCA 72888149 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || || || || ||||| |||||| || |||||||| ||| Sbjct 72888150 GACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGA 72888209 Query 127004 GGTATGCCCTCCTTGTCC 127021 || || || | ||| ||| Sbjct 72888210 GGAATTCCTTTCTTATCC 72888227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473808445102720