Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq118169 89.7 4e-13 seq93337 89.7 4e-13 seq86915 89.7 4e-13 seq205124 86.0 5e-12 seq169025 86.0 5e-12 seq4 86.0 5e-12 seq263593 82.4 6e-11 >seq118169 Length=6658 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||||| ||||||||||| ||| | ||||| | | ||| || | | |||| Sbjct 3998 CCTCATGTTGCACATGACAGGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCTG 3939 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || | || ||||| ||||| || || | | || Sbjct 3938 CCCACTTCTGGAAGGTTCCATCCCCTGTAGGCCTGGTCTCCACGAGCTCCGTGTCCTGAG 3879 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | ||| |||| | || ||||| || | || || |||||||| |||||||| || Sbjct 3878 TTTGTTCCTCTCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGG 3819 Query 529 CCCAACA 535 |||| || Sbjct 3818 CCCAGCA 3812 >seq93337 Length=1119 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||||| ||||||||||| ||| | ||||| | | ||| || | | || | Sbjct 165 CCTCATGTTGCACATGACAGGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCCG 224 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || | || ||||| ||||| || | | |||| Sbjct 225 CCCACTTCTGGAAGGTTCCATCCCCTGTAGGCCTGGTCTCCACGAGCTCTGTGTCTTCAG 284 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | ||| |||| | || ||||| || | || || |||||||| |||||||| || Sbjct 285 TTTGTTCCTCTCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGG 344 Query 529 CCCAACA 535 ||||||| Sbjct 345 CCCAACA 351 >seq86915 Length=4322 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||||| ||||||||||| ||| | ||||| | | ||| || | | || | Sbjct 900 CCTCATGTTGCACATGACAGGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCCG 959 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || | || ||||| ||||| || | | |||| Sbjct 960 CCCACTTCTGGAAGGTTCCATCCCCTGTAGGCCTGGTCTCCACGAGCTCTGTGTCCTCAG 1019 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | ||| |||| | || ||||| || | || || |||||||| |||||||| || Sbjct 1020 TTTGTTCCTCTCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGG 1079 Query 529 CCCAACA 535 ||||||| Sbjct 1080 CCCAACA 1086 >seq205124 Length=919 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||||| ||||||||||| ||| | ||||| | | ||| || | | || | Sbjct 223 CCTCATGTTGCACATGACAGGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCCG 164 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || | || ||||| ||||| || | | |||| Sbjct 163 CCCACTTCTGGAAGGTTCCATCCCCTGTAGGCCTGGTCTCCACGAGCTCTGTGTCCTCAG 104 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | ||| |||| | || ||||| || | || || |||||||| |||||||| || Sbjct 103 TTTGTTCCTCTCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGG 44 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||| || | || || | | | |||||| Sbjct 43 CCCAGCACCTCAGGGTGGCCTCATGGTCAG 14 >seq169025 Length=13386 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||||||||| ||| | ||||| || | ||| || | | || | Sbjct 2137 CCTCATGCTGCACATGACAGGTGTATCTCTGCTCCTTTCCAGAAGGCACCACCACAGCCG 2196 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||| || || ||||| ||||| || || | | || Sbjct 2197 CCCACTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTCTCCACGAGCTCCGTGTCCTGAG 2256 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | | | ||| | || ||||| || | || || |||||||| |||||||| || Sbjct 2257 TTTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGG 2316 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||| || | || || | | | |||||| Sbjct 2317 CCCAGCACCTCAGGGTGGCCTCATGGTCAG 2346 >seq4 Length=172585720 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||||||||| ||| | ||||| || | ||| || | | || | Sbjct 30486868 CCTCATGCTGCACATGACAGGTGTATCTCTGCTCCTTTCCAGAAGGCACCACCACAGCCG 30486809 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||| || || ||||| ||||| || || | | || Sbjct 30486808 CCCACTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTCTCCACGAGCTCCGTGTCCTGAG 30486749 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | | | ||| | || ||||| || | || || |||||||| |||||||| || Sbjct 30486748 TTTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGG 30486689 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||| || | || || | | | |||||| Sbjct 30486688 CCCAGCACCTCAGGGTGGCCTCATGGTCAG 30486659 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||||||||| ||| | ||||| || | ||| || | | || | Sbjct 30617877 CCTCATGCTGCACATGACAGGTGTATCTCTGCTCCTTTCCAGAAGGCACCACCACAGCCG 30617818 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||| || || ||||| ||||| || || | | || Sbjct 30617817 CCCACTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTCTCCACGAGCTCCGTGTCCTGAG 30617758 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | | | ||| | || ||||| || | || || |||||||| |||||||| || Sbjct 30617757 TTTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGG 30617698 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||| || | || || | | | |||||| Sbjct 30617697 CCCAGCACCTCAGGGTGGCCTCATGGTCAG 30617668 >seq263593 Length=28888 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||||| | ||| || | | ||| Sbjct 4328 CCTCATGCTGCACATGGCACGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCTC 4269 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||| |||| ||||| ||||| || | | | || Sbjct 4268 CCCACTTCTGGAAGGTTCCATCTCCTCCTGGCCTGGTCTCCACAAGCTCAGTGTCCTGAG 4209 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | ||| |||| | || ||||| || | || || |||||||| |||||||| || Sbjct 4208 TTTGTTCCTCTCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGG 4149 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||| || | || || | | | |||||| Sbjct 4148 CCCAGCACCTCAGGGTGGCCTCATGGTCAG 4119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396366968491968