Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq114127 96.9 1e-15 seq237451 93.3 1e-14 seq128769 93.3 1e-14 seq128457 93.3 1e-14 seq12 84.2 6e-12 seq9 80.6 7e-11 >seq114127 Length=15708 Score = 96.9 bits (106), Expect = 1e-15 Identities = 180/263 (68%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 965 TGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGATTGATGT 1024 ||| |||||||| ||| ||||||| ||||| || || || || || | |||||||| Sbjct 9798 TGGGTGTTATGGAAGAGTAGCTCCAAGGTCAGGCTTGGCTGCAAAACACTTTATTGATGT 9739 Query 1025 GGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATTT 1084 || |||||||| || ||| ||| | ||| || || ||||||||||| | |||||||| Sbjct 9738 AGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTT 9679 Query 1085 TAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTTGTGA 1141 | || || ||| ||| | | || |||||| | ||||| || | ||||| || Sbjct 9678 TGGCAAAGAAAAG---TTTGAAGTCAAAAAGGGTGATCGAATTGCACAACTCATTTGCGA 9622 Query 1142 AAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGGGTTC 1201 | | | ||| | || || || ||| | | || || || | ||||||||||| Sbjct 9621 ACGGATTTTTTATGCAGAAATAGAAGAAGTTCAAGCTTTGGATGACACCGAAAGGGGTTC 9562 Query 1202 TGCAGGATTTGGGTCTACCGGAA 1224 | || ||||| || || |||| Sbjct 9561 AGGCGGTTTTGGTTCCACTGGAA 9539 >seq237451 Length=7360 Score = 93.3 bits (102), Expect = 1e-14 Identities = 179/263 (68%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 965 TGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGATTGATGT 1024 ||| |||||||| ||| ||||||| |||| || || || || || | |||||||| Sbjct 591 TGGGTGTTATGGAAGAGTAGCTCCACGGTCAGGCTTGGCTGCAAAACACTTTATTGATGT 532 Query 1025 GGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATTT 1084 || |||||||| || ||| ||| | ||| || || ||||||||||| | |||||||| Sbjct 531 AGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTT 472 Query 1085 TAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTTGTGA 1141 | || || ||| ||| | | || |||||| | ||||| || | ||||| || Sbjct 471 TGGCAAAGAAAAG---TTTGAAGTCAAAAAGGGTGATCGAATTGCACAACTCATTTGCGA 415 Query 1142 AAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGGGTTC 1201 | | | ||| |||| || || ||| | | || || || | ||||||||||| Sbjct 414 ACGGATTTTTTATCCAGAAATAGAAGAAGTTCAAGCTTTGGATGACACCGAAAGGGGTTC 355 Query 1202 TGCAGGATTTGGGTCTACCGGAA 1224 | || ||||| || | |||| Sbjct 354 AGGCGGTTTTGGTTCCAATGGAA 332 >seq128769 Length=6953 Score = 93.3 bits (102), Expect = 1e-14 Identities = 179/263 (68%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 965 TGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGATTGATGT 1024 ||| |||||||| ||| ||||||| |||| || || || || || | |||||||| Sbjct 6363 TGGGTGTTATGGAAGAGTAGCTCCACGGTCAGGCTTGGCTGCAAAACACTTTATTGATGT 6422 Query 1025 GGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATTT 1084 || |||||||| || ||| ||| | ||| || || ||||||||||| | |||||||| Sbjct 6423 AGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTT 6482 Query 1085 TAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTTGTGA 1141 | || || ||| ||| | | || |||||| | ||||| || | ||||| || Sbjct 6483 TGGCAAAGAAAAG---TTTGAAGTCAAAAAGGGTGATCGAATTGCACAACTCATTTGCGA 6539 Query 1142 AAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGGGTTC 1201 | | | ||| |||| || || ||| | | || || || | ||||||||||| Sbjct 6540 ACGGATTTTTTATCCAGAAATAGAAGAAGTTCAAGCTTTGGATGACACCGAAAGGGGTTC 6599 Query 1202 TGCAGGATTTGGGTCTACCGGAA 1224 | || ||||| || | |||| Sbjct 6600 AGGCGGTTTTGGTTCCAATGGAA 6622 >seq128457 Length=7192 Score = 93.3 bits (102), Expect = 1e-14 Identities = 179/263 (68%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 965 TGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGATTGATGT 1024 ||| |||||||| ||| ||||||| |||| || || || || || | |||||||| Sbjct 591 TGGGTGTTATGGAAGAGTAGCTCCACGGTCAGGCTTGGCTGCAAAACACTTTATTGATGT 532 Query 1025 GGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATTT 1084 || |||||||| || ||| ||| | ||| || || ||||||||||| | |||||||| Sbjct 531 AGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTT 472 Query 1085 TAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTTGTGA 1141 | || || ||| ||| | | || |||||| | ||||| || | ||||| || Sbjct 471 TGGCAAAGAAAAG---TTTGAAGTCAAAAAGGGTGATCGAATTGCACAACTCATTTGCGA 415 Query 1142 AAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGGGTTC 1201 | | | ||| |||| || || ||| | | || || || | ||||||||||| Sbjct 414 ACGGATTTTTTATCCAGAAATAGAAGAAGTTCAAGCTTTGGATGACACCGAAAGGGGTTC 355 Query 1202 TGCAGGATTTGGGTCTACCGGAA 1224 | || ||||| || | |||| Sbjct 354 AGGCGGTTTTGGTTCCAATGGAA 332 >seq12 Length=125506784 Score = 84.2 bits (92), Expect = 6e-12 Identities = 180/266 (68%), Gaps = 15/266 (6%) Strand=Plus/Plus Query 965 TGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGATTGATGT 1024 ||| |||||||| ||| ||||||| |||| || || || || || | ||||| || Sbjct 61856223 TGGGTGTTATGGAAGAGTAGCTCCACGGTCAGGCTTGGCTGCAAAACACTTTATTGACGT 61856282 Query 1025 GGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATTT 1084 || |||||||| || || ||| | ||| || || ||||||||||| | || ||||| Sbjct 61856283 AGGAGCTGGTGTCATAAATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGTTCAATTT 61856342 Query 1085 TAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTTGTGA 1141 | || || ||| ||| | | || |||||| | ||||| ||| | ||||| || Sbjct 61856343 TGGCAAAGAAAAG---TTTGAAGTCAAAAAGGGTGATCGAATTGCACAGCTCATTTGCGA 61856399 Query 1142 AAAGGCTGTTTTTCCATCCATTCAAAT---AGTGGATTCCTTAGAGGATTCGGAAAGGGG 1198 | | | |||| ||||| |||| ||| | | || || || | |||||||| Sbjct 61856400 A----CGGATTTTTTATCCA--GAAATAGAAGTTCAAGCTTTGGATGACACCGAAAGGGG 61856453 Query 1199 TTCTGCAGGATTTGGGTCTACCGGAA 1224 ||| | || ||||| || || |||| Sbjct 61856454 TTCAGGTGGGTTTGGTTCCACTGGAA 61856479 >seq9 Length=129882849 Score = 80.6 bits (88), Expect = 7e-11 Identities = 177/260 (68%), Gaps = 9/260 (3%) Strand=Plus/Minus Query 970 GTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCG-GCTAAGTTTATGATTGATGTGGGT 1028 ||||||| ||| ||||||| ||| || || || || || | |||||||| || Sbjct 87874118 GTTATGGAAGAGTAGCTCCACAGTCAGGCTTGGCTTGCAAAACACTTTATTGATGTAGGA 87874059 Query 1029 GCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATTTTAGC 1088 |||||||| || ||| ||| | ||| || || ||||||| ||| | ||||| ||| || Sbjct 87874058 GCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGGTGTACTGTTTAACTTTGGC 87873999 Query 1089 ---GATAAGCGTTTTCATATTTCAAGAG-GTGATAGGATTGCTCAGTTAATTTGTGAAAA 1144 || ||| ||| | | | || || ||||| | ||||| ||| | ||||| ||| Sbjct 87873998 AAAGAAAAG---TTTGA-AGTCAAAAAGTGTGATCGAATTGCACAGCTCATTTGCGAACG 87873943 Query 1145 GGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGGGTTCTGC 1204 | | ||| |||| || || ||| | | || || || | ||||||||||| | Sbjct 87873942 GATTTTTTATCCAGAAATAGAAGAAGTTCAAGCTTTGGATGACACCGAAAGGGGTTCAGG 87873883 Query 1205 AGGATTTGGGTCTACCGGAA 1224 ||| ||||| || || |||| Sbjct 87873882 AGGTTTTGGTTCCACTGGAA 87873863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138212697401568