Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq16 118 8e-22 seq11 105 5e-18 seq10 95.1 1e-14 seq5 89.7 4e-13 seq15 87.8 1e-12 seq7 87.8 1e-12 seq2 82.4 6e-11 >seq16 Length=77216781 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || ||||| || | | ||| | | |||| |||| ||| Sbjct 16306437 TGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 16306496 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || ||||| ||||||||||| ||||| || ||||| Sbjct 16306497 TTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTG 16306556 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| | |||||| | ||||| ||||| |||| || |||||||| Sbjct 16306557 GCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTC 16306616 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 16306617 AGGGTCTTCACGAAGATCTGCAT 16306639 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| || | | ||| | | |||| |||| ||| Sbjct 16305981 TGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 16306040 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || ||||| || ||||||||||||||||| || || Sbjct 16306041 TTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCTTGGATCTTG 16306100 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| | |||||| | ||||| || || |||| || |||||||| Sbjct 16306101 GCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 16306160 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || |||||||| Sbjct 16306161 AGGGTTTTCACGAAGATCTGCAT 16306183 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| || | | ||| | | |||| |||| ||| Sbjct 16306209 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 16306268 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || ||||| || |||||||||||||| || || || Sbjct 16306269 TTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTG 16306328 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| | |||||| | |||||||| || |||| || |||||||| Sbjct 16306329 GCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTC 16306388 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 16306389 AGGGTCTTCACGAAGATCTGCAT 16306411 >seq11 Length=133663169 Score = 105 bits (116), Expect = 5e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || ||||| || | | || | |||| |||| ||| Sbjct 125065292 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 125065351 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| | ||| || ||||| ||||||||||| |||||||| || ||| Sbjct 125065352 TTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTT 125065411 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | || || |||||||||| || ||||| || Sbjct 125065412 GCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTC 125065471 Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472 | || || || || |||||||| || Sbjct 125065472 AGGGTCTTCACGAAGATCTGCATTGT 125065497 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || | || ||||| || ||||| || || ||||| || | Sbjct 125064812 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 125064871 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| ||||| || ||||| ||||| | ||| || || || ||| Sbjct 125064872 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGA 125064931 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || || ||| || ||| | || | |||||| | ||||| Sbjct 125064932 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 125064991 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || ||||| || | || || || || |||||||| Sbjct 125064992 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 125065038 >seq10 Length=92844088 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/212 (69%), Gaps = 11/212 (5%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||| ||||| || ||||| || ||||| || | |||| Sbjct 27013250 AACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA-----------CATCT 27013298 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||||||||| || ||||| |||| | || ||||| || ||||| ||||| ||||| Sbjct 27013299 TCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCC 27013358 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || |||||| ||||| |||| | | ||| || ||||| |||| || Sbjct 27013359 TGGATATTGGCCTTTACATTTTCTGTTGTGTTCAAGGGTTCAACCTCAAGGGTGATGGTC 27013418 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | ||||| || || |||||||| Sbjct 27013419 TTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 27013450 >seq5 Length=190429646 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 5/212 (2%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAG--TTCTGGCATCGTCCAATT 101324 || ||||| || |||| | || ||||| || | || || | | | |||| |||| | Sbjct 87219631 TGCAGGGTGGACTCTT---GGATGTTGTAGTCTGAGAGAGAGTGCGGCCATCTTCCAGCT 87219575 Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 | || | |||||||||| |||||| || || || || || || || || |||||||||| Sbjct 87219574 GTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTT 87219515 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 | ||| || | || | |||||| | || || ||||| |||| |||||||| | Sbjct 87219514 TGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCCG 87219455 Query 101445 TTAAAGTTTTTACAAATATCTGCATGGTTACG 101476 | || || ||||| ||||||||| || || Sbjct 87219454 GGAGGGTCTTCACAAAGATCTGCATGTTTGCG 87219423 >seq15 Length=111343173 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331 ||| || | |||||| || ||||| || | || ||| | | |||| |||| ||||| || Sbjct 61913969 GGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCTCCAGCTGCTTGCC 61914028 Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391 |||||||||| || ||| || || || || || || ||||| ||||||||||| ||| Sbjct 61914029 AGCAAATATCAGACACTGCTGGTCAGGTGGGATACCCTCTTTGTCTTGAATTTTGGCTTT 61914088 Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451 | | | || |||| | | || || ||||| ||| || ||||| || | || Sbjct 61914089 GAAATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGATGATGGTCTTGCCCGTGAGGGT 61914148 Query 101452 TTTTACAAATATCTGCAT 101469 | ||||| | |||||| Sbjct 61914149 CTCCACAAAGAGCTGCAT 61914166 >seq7 Length=169600520 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/203 (70%), Gaps = 5/203 (2%) Strand=Plus/Minus Query 101270 AGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTA 101329 ||||| || ||||| || || ||||| | | || ||| | | |||| |||| || || Sbjct 120107764 AGGGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTC 120107705 Query 101330 CCTGCAAATATCAAACGCTGTTGATCGGGCGGAATG-CCTTCTTTATCTTGAATTTTTTG 101388 || |||| ||||| |||||| || || || | || || || || ||||||||||| Sbjct 120107704 CCAGCAAGTATCAGACGCTGCTGGTCAGGTAGGATATCCCTCCTTGTCTTGAATTTTGGC 120107645 Query 101389 TTTTACAATTTCTACA--GTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| ||||| | |||||| | || | ||||| |||| || ||||| || Sbjct 120107644 TTTGACA--TTCTAAATGGTGTCACTGGGCTCAATCTCAAGGGTGATGGTCTTGCCCGTG 120107587 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 120107586 AGGGTCTTCACAAAGATCTGCAT 120107564 >seq2 Length=204787373 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || |||| || | ||| || | || ||||| | |||| |||| || Sbjct 184232492 TGCAGGGTGGACTCTTCCCAGATGTCGTAGTCTGAGAGAGTTCGGCCATCCTCCAGCTGT 184232433 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || |||| ||||| | |||| || || || || || || || || ||||||||||| Sbjct 184232432 TTGCCGGCAAGTATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTG 184232373 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| || |||||| | | || |||||||||| || ||||| || Sbjct 184232372 GCTTTGACATCCTCATTGGTGTCACTGGGCTTGACCTCAAGAGTGATGGTCTTGCCCGTA 184232313 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 184232312 AGGGTCTTCACAAAGATCTGCAT 184232290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394903265407896