Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq7 86.0 5e-12 seq11 82.4 6e-11 >seq7 Length=169600520 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || || ||| |||||||||||||| ||||| | | | || | || Sbjct 127523807 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 127523748 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||||| || ||||| | |||| || ||||| || Sbjct 127523747 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 127523688 Query 48674 GCTAATCTTTTGTTTTACAGAACCCA-CAGACTCTGACGCCTCCACCTCCACCGTAATCG 48732 ||||| |||||| | | || | || || | || ||||| | || || | Sbjct 127523687 CTGGATCTTGGCCTTTACATTTTCTATCATA-TCCGAGGGTTCAACCTCGAGGGTGATGG 127523629 Query 48733 TTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | || ||||| | ||||| || ||||||||||| Sbjct 127523628 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 127523595 >seq11 Length=133663169 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||| || || ||| |||||| || || ||||| ||||| Sbjct 125064584 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 125064643 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||| |||||| || ||||| |||| | ||| || || | || Sbjct 125064644 AGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 125064703 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| |||||| || ||| | | || || | ||||||| Sbjct 125064704 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATAGTGTCACTGGGCTCCACC 125064763 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || || || |||| || || || || ||||||||| Sbjct 125064764 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 125064811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379615699863144