Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq19 196 9e-45 seq166179 96.9 6e-15 seq14 96.9 6e-15 seq1 89.7 1e-12 >seq19 Length=53671032 Score = 196 bits (216), Expect = 9e-45 Identities = 189/243 (78%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||||||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 12739506 AGCAGCTGACAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 12739447 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | |||||| | ||||| || ||||| || | ||||||| |||||| Sbjct 12739446 TCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGCGTCTTCACC 12739387 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 12739386 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 12739327 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| || ||||| ||||||| ||| || Sbjct 12739326 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCTTGGTCTTCCATGTTGATGGGG 12739267 Query 241625 GAC 241627 ||| Sbjct 12739266 GAC 12739264 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 18296087 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCTGTGGACGCCAGC 18296146 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||| || |||||||||||||||||| |||| |||||| ||||| Sbjct 18296147 TCCGTGTTCTGGCTCTTAAGGGTCTTCACTTTCTCCTCCAGGCGCGAGATGCGCTCCAGC 18296206 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||||| Sbjct 18296207 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 18296266 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 18296267 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 18296299 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/115 (77%), Gaps = 8/115 (7%) Strand=Plus/Minus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| ||||||||| | ||||| || | | |||||| | ||||| ||||||| Sbjct 12739469 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGT 12739410 Query 238986 TATCAGACTTGAGCAT--------TCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | ||||||| | | |||||||| ||||||||||| |||||||| Sbjct 12739409 TCTCGGCCTTGAGCGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 12739355 >seq166179 Length=1001 Score = 96.9 bits (106), Expect = 6e-15 Identities = 92/115 (80%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| || || |||||||||||||||||| |||||| ||||||||||| ||| Sbjct 588 GTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 647 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCT 213641 || |||| || | || ||||| ||||||||||| || |||| || || ||| Sbjct 648 TTGCTCTTT-CGATTACAGGAATCTTTGTAGAGCATATATGGGGTGCCTGTTTCT 701 >seq14 Length=127894412 Score = 96.9 bits (106), Expect = 6e-15 Identities = 92/115 (80%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| || || |||||||||||||||||| |||||| ||||||||||| ||| Sbjct 63313813 GTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 63313872 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCT 213641 || |||| || | || ||||| ||||||||||| || |||| || || ||| Sbjct 63313873 TTGCTCTTT-CGATTACAGGAATCTTTGTAGAGCATATATGGGGTGCCTGTTTCT 63313926 >seq1 Length=225584828 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 58441949 TTCACTTTTTCCTCCAGCCGGGCGATTCTCTCCAGCTTCCTTTTTCGGCACTTGGAGGCA 58442008 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| ||||||||| Sbjct 58442009 GCAATGCGGTTCCTCATACGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCA 58442068 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 58442069 ATGGGGGAC 58442077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928217381611520