Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq21 105 1e-17 seq13 87.8 3e-12 >seq21 Length=149150640 Score = 105 bits (116), Expect = 1e-17 Identities = 392/601 (65%), Gaps = 29/601 (5%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||| |||||||| || || |||||||||||| ||| | || Sbjct 44401414 GATATCTGGCAGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGAC 44401355 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCTCA 25591 | | |||||||||| |||| | || | || || ||| ||||| | Sbjct 44401354 CCGTCCAAGGACATTTGGCACTGGGAATTCCTGAAGCCCGAGGAGAGAT--ATTTTATAT 44401297 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 | || ||| |||||||| || |||||| ||||| || | || || ||| Sbjct 44401296 CCCATGTTCTGGTTTTCTTTGC-GCAAGTGATGGCATAGTAAATGCAAACTTGGTGGAGC 44401238 Query 25652 GATTCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGG 25708 ||| | | ||||| ||| ||| || ||| ||||||| || ||||| || | Sbjct 44401237 GATGTAGCCAAGAAGTTCAG---GTGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTG 44401181 Query 25709 CCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTC--TGATGACG--TACATTACA 25764 |||| ||||| | || |||| ||||| || ||| | |||| ||||| | | Sbjct 44401180 CCATGGAAAACATACATTCTGGAATGTAT----AGTTTCCTTATTGACACTTACATAAAA 44401125 Query 25765 GACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG 25824 || | || || || | || |||||| || || || | |||||| | Sbjct 44401124 GATCCCAAAGAAAGGGAATTTCGCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAG 44401065 Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC-GCTACGTTTGGCGAGCGGCT 25883 ||||| |||||| || | ||||| | || ||| ||||| | ||| || || | Sbjct 44401064 AAGGCAGATTGGGCCTTGCACTGGATTGGG-GACAAAGCAGCTACCTATGGGGAACGTGT 44401006 Query 25884 GGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTG 25943 |||| ||||||||| | ||| |||||||||| |||| ||||| | || ||||| Sbjct 44401005 TGTAGTCTTTGCTGCAGCGGAAGGCATCTTTTCT---GGTTATTTTGCATCGATATTCTG 44400949 Query 25944 GCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 ||||||| | | | |||| ||||| || || ||||||||| || || || || | | Sbjct 44400948 GCTCAAG-AAACGAGGACTGATGCCTGGCCTCACCTTTTCCAATGAACTTATTAGTGGAG 44400890 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAAC 26062 | |||||| | ||| | |||||||| |||||| | | || ||| || | ||||||| Sbjct 44400889 ATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCA---ATCACCTGGTACACAAAC 44400833 Query 26063 C 26063 | Sbjct 44400832 C 44400832 >seq13 Length=108979918 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 ||||||||||| || ||||| |||||||| || |||||| ||||| | || |||||| Sbjct 10124835 GTAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGG 10124894 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 |||||| | | | |||| ||||| || || |||||||| || || |||||||| || Sbjct 10124895 CTCAAG-AAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATCAGCAGAGA 10124953 Query 26004 CGAGG 26008 |||| Sbjct 10124954 TGAGG 10124958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 925538948472320