Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq15 293 3e-74 seq2 185 1e-41 seq6 109 6e-19 seq7 102 9e-17 seq4 84.2 3e-11 >seq15 Length=111343173 Score = 293 bits (324), Expect = 3e-74 Identities = 660/986 (67%), Gaps = 13/986 (1%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 || ||| || |||| ||| |||| ||| || | |||||| || |||| || ||||| || Sbjct 92764723 CAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAACTTATTGGC 92764664 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || | || ||||||| || ||| || | || || | ||| || Sbjct 92764663 AAACAAGTGGTGT---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCAAAAATGCACAC 92764607 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| || || | ||| || ||||| | || || || | || ||||| || Sbjct 92764606 CGAGCGCACGTGGACTCCATCGCAGGGAGGGTAGGGGGCACCCTTGGAAACATCACCCTC 92764547 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||| |||||||| ||||||||||| | || |||||||| || ||||| || | Sbjct 92764546 AAAGTATTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCGTACTTATG 92764487 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || | || || || | || || | ||| | ||||||||| || | || Sbjct 92764486 GCTGGCAGAAAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGTGGCCCAGAGATACTC 92764427 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||| ||||| | | ||| ||||| |||| ||| | | | || Sbjct 92764426 ATCAGGGCTGTATGTGTCTTGCGCCCACTCCATAAACTTCTGGATGTTTTCATTCTGTAG 92764367 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 || | || || || | || |||||||| || ||||| || || | ||| | Sbjct 92764366 TACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAAAAAGAGGTGT 92764307 Query 160472 ---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAG 160528 | | ||| || | |||| | || ||||| | || | ||| || || | Sbjct 92764306 TTCGAGCGGAGGAAGCAT---TTTGACAGTCCCTGTGTTTGTCAGCTTTCCATTAACGAC 92764250 Query 160529 CGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACT 160588 | | | ||||| |||||||| | || || | |||||| | ||||| || || || Sbjct 92764249 CTCATACCGCTTTTTCCACCTTTCTTCTTTATGGGATGGCATCCTCTCCGTTTCCAGGCT 92764190 Query 160589 GTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAA 160648 ||| | || | | | || |||| | |||| || |||||||| || || | ||||| Sbjct 92764189 GTTTTCTCCCATTAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAATAGGAAA 92764130 Query 160649 GTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCT 160708 || |||| || | ||||||| ||||||||| || || |||| | | |||||| | Sbjct 92764129 ATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATTGCATAGAGGTCCTT 92764070 Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768 |||||| || | || ||||| || || ||||| || || || || || |||| | | Sbjct 92764069 CATGCAGTTGAGGTCAGCCTGAACCCGACTCCATGATGCATAAACCACACTCTCCAATCG 92764010 Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAAGAAC 160826 |||||||||||||| ||| |||||| || |||| |||| ||| | ||| ||| | Sbjct 92764009 GCTGGCCACAAAGACATTACTGAAACAGGAAGCGATGCCCATCACTG-CAGCTAAATAGG 92763951 Query 160827 ATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCC 160886 | | || | ||| |||||| || | |||||| | ||||||||| ||||||||| Sbjct 92763950 A-ATCCTCGGATTTTGTGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGATGGCC 92763892 Query 160887 CTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGA 160946 || |||| ||| || | ||| || ||||| ||||| | ||| ||||| || ||||| ||| Sbjct 92763891 CTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGCTATTGGA 92763832 Query 160947 AACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAA 161006 ||||| | ||| || ||| |||| | | || || || ||||||| ||| || Sbjct 92763831 AACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGTCTCTTGATGAAAGAA 92763772 Query 161007 TCACAATCCCGCGTCATGTTGATATA 161032 ||| || | |||||||| ||||| Sbjct 92763771 GTACAGTCACTGGTCATGTTTATATA 92763746 >seq2 Length=204787373 Score = 185 bits (204), Expect = 1e-41 Identities = 236/324 (73%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 168151 ATAGA--GTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCA 168208 ||||| || | ||| | | |||| || ||||| || || || || || |||||||| || Sbjct 33410455 ATAGACCGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGACA 33410396 Query 168209 CATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAG 168268 |||| | || ||||| ||||||| |||| ||||||| || || | |||| |||| |||| Sbjct 33410395 CATGTAACACCCTTCATCCTCCAGGGTGATATTCCAGAAGGTGATGGTTGTGTTTTGGAG 33410336 Query 168269 GCCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTT 168328 |||| ||| || ||||| | || ||||| | ||| || | || || || ||||| Sbjct 33410335 TCCCAGCTGGGTAATGTTTATCTTGTCCTTATAGGCAGGCTGGATCACCACCCCATGGTT 33410276 Query 168329 CTCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTAT 168388 ||||||||||||| ||||||| || ||||| || || | |||||||| || || || Sbjct 33410275 CTCGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAAT 33410216 Query 168389 CAGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTC 168448 ||| || || | | | ||||| || ||||| | ||||| ||||||| |||| | || Sbjct 33410215 CAGGACTTCCTGGGCATTTTGCAGAGAGCATCTTAAGGAAGCAGGAGTGTACAGCTGCTC 33410156 Query 168449 TCGCTCATCTTGAGTTACGACCTG 168472 || ||||| || || || || || Sbjct 33410155 TCTTTCATCCTGGGTCACCACTTG 33410132 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/220 (69%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942 |||||| | ||| || ||||| |||| || || |||| ||| |||||||| || Sbjct 33412997 GTTTGCTTAAAGTCAGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTC 33412941 Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002 || || ||| |||| || ||||| || || | ||||| || ||| ||||| ||||| Sbjct 33412940 CCCACCTGATTCTTAGGGTCTTTGACATGGAGGATGCTGGTAACAGACGTAGTCCCATTT 33412881 Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062 | || | | || || || || |||| |||||| | | ||||||||||| || Sbjct 33412880 GGGTGAGACAGAGTCACTGTACTATTTTCAAACCCTGACCGAGGGACCTTCCAGAAGATC 33412821 Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | || || || || || || |||||||| || || |||| Sbjct 33412820 ATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATGTTTA 33412781 >seq6 Length=180051392 Score = 109 bits (120), Expect = 6e-19 Identities = 219/323 (68%), Gaps = 5/323 (2%) Strand=Plus/Plus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| |||| | || |||| |||||||| ||| || | ||||| ||| ||| | ||| Sbjct 23058509 TGTCTCAGAAGATCATCCAAACATTGGATGGCAAAGAGGTCAATGTCAATGTCAAGCTTA 23058568 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || || | ||||| || | || ||||||| || ||| || | || || | | Sbjct 23058569 TTGGCAAATAAGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCAAAAATG 23058625 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || || | |||| | || | ||| | |||| |||| ||||| | || ||| Sbjct 23058626 CACACCGAGTGATTGTGGTCCCCATCGCA--GTAGGTAGGGAGCACCTTTGGAAACATCA 23058683 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 || || || |||||||||| ||||||||||| | || |||||||| || ||| || Sbjct 23058684 CCCTCCAAGCACTGCCACTTGACAAACCTGGCAACTGCATGCATGTCAGACAAGTCATAC 23058743 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 || | | || | | |||||| || | || |||| ||| | ||| |||| || Sbjct 23058744 TTATGGTTTGTGGAGAGTGAACCGGGGACTTCAGGAATACTCTGGATGGTATCCCAGAGA 23058803 Query 160347 TGTTCGTCGGGGCTGTACGTGTC 160369 || || || ||||||| ||||| Sbjct 23058804 TGCTCATCAGGGCTGTGTGTGTC 23058826 Score = 93.3 bits (102), Expect = 5e-14 Identities = 225/338 (67%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 160623 ATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCAT 160682 || |||||||| | || | ||||| || |||| || | |||| || | | ||||| Sbjct 23059078 ATTTCTAGGTTGGATTTAATGGGAAAATCCATACCACAAAGTTTTACCAAGAATTTCCAG 23059137 Query 160683 TTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAG 160742 | ||| | | ||||| ||||||| || | | ||||| || ||||||| Sbjct 23059138 CCTGAAGTCATTGCTTAGAGGTCATTCATGCAGTTGAGGTTAGCCTGAACCTGGCTCCAT 23059197 Query 160743 GAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACG 160802 || || || || || |||| | | || ||||||||||| ||| |||||| | | Sbjct 23059198 GATGCATAAACCACCGTCTCCAATCAGCTCGCCACAAAGACTTTACTGAAACAGAATGCA 23059257 Query 160803 ATTCCCACCACCGCC---AGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAA 160859 || |||| ||| || | |||| | ||| | | | ||| ||||||||| | || | Sbjct 23059258 ATGCCCATCACTGCAGCTAAAAAGGA-ATCCTCT--GATTTTTTGTCCACGTGAATGCGA 23059314 Query 160860 TACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGA 160919 || | |||||| || ||||||||||| || | ||| | | ||| || ||||| ||| Sbjct 23059315 TAGAAATTCTGAAGCATATAGATGGCCCTCAGTAGCCTGTAAAGCATTTCAATCTTGTGA 23059374 Query 160920 TGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTC 160957 || | | ||||| || ||| | ||||||| | ||| Sbjct 23059375 TGAACTGCTATAGAATATGCTGTTTGAAACTCCGCCTC 23059412 >seq7 Length=169600520 Score = 102 bits (112), Expect = 9e-17 Identities = 198/290 (68%), Gaps = 7/290 (2%) Strand=Plus/Minus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || || || ||||| || || ||| || || |||||||||| ||| || | Sbjct 36199479 GTCAAACTTGTTGGCCAACAGGTGATG---GTTTTGAAGCATCCAGTGCAAGTCCCCAGC 36199423 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| | || ||||| | || ||| | || |||||| | || |||| || || Sbjct 36199422 CCCATAAACACAGACAGCCCGCTGGTGGATTCCAGAGCAAGGGGCATAAGGAGCACCCTT 36199363 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | | ||| || || | | ||||||||| || | |||||| || | |||||| || Sbjct 36199362 ATCGATGTCTCCCTCATGATCCTGCCACTTGACCAGCCTGGCAATAGAAGTCATGTCTGA 36199303 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAA--CGCCGGGCATACGCTGTAGG 160334 | ||||||| ||| |||||| | || || | | ||| ||| ||||| ||| Sbjct 36199302 GATGTCGTACTTGGGGTGGTTGGGAACAGAGCCAGGCATCCACCGTGCA--CGCTGAAGG 36199245 Query 160335 GTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 |||||||| |||||||| || ||||| || ||||| || |||||| || Sbjct 36199244 GTGGCCCAGAGGTGTTCATCAGGGCTATAGGTGTCTTTTACCCATTCAAT 36199195 >seq4 Length=172585720 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/234 (68%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||||| |||||| | |||| ||| |||| |||||| | |||||| | | || || | Sbjct 61820296 TGTGTCTCAGATGCTTATCCAAACACTGGATGGCGAAAAGGTCAACATACACATCAAACT 61820237 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCG-AAC 160163 |||| | ||||| |||| || | || ||||||| || |||||| | | | || Sbjct 61820236 TATTGACAAACAGGCGGTGC---TTGAGCAGCATCCAGTTCAAGTCTCCAGCTCTGGAAA 61820180 Query 160164 ACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACG 160223 ||||| | || | ||||| || || | ||| | || | |||| || | | || Sbjct 61820179 ACGCACATTGAGCACATGTGGACTCCATCGCAGGATGGTCATGGAGCACCCTAGGAAACA 61820120 Query 160224 TCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAG 160277 ||| || |||||| |||||| ||| | || || || || |||||||||||| Sbjct 61820119 TCATACTCAAAGTACTACCACTTGACAGAGCTAGCAATTGCGTGCATGTCGGAG 61820066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575164819145280