Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq7 132 9e-26 seq15 123 5e-23 seq8 118 2e-21 seq21 98.7 2e-15 seq16 96.9 7e-15 seq10 96.9 7e-15 seq17 87.8 4e-12 seq3 84.2 4e-11 >seq7 Length=169600520 Score = 132 bits (146), Expect = 9e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || |||| Sbjct 127523822 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 127523764 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | ||| || |||||||| | Sbjct 127523763 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 127523704 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||| ||| || | ||| | Sbjct 127523703 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAA 127523644 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || || || | ||||| | || ||||||||||| Sbjct 127523643 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 127523592 >seq15 Length=111343173 Score = 123 bits (136), Expect = 5e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || |||| Sbjct 72888092 ACCACCACGAAGTCTCAACACGAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 72888150 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | ||| || |||||||| | Sbjct 72888151 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 72888210 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||||||| ||||| || || | | |||||| ||| | |||||| | ||| Sbjct 72888211 GAATTCCTTTCTTATCCTGGATCTCGGCCTCTACATTTTATATCGTATCTGAGGGTTCAG 72888270 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || || | | ||||| || || ||||||||||| Sbjct 72888271 CCTCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCATGAAAATCTGCATTTT 72888322 >seq8 Length=144306982 Score = 118 bits (130), Expect = 2e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || |||| Sbjct 73239607 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 73239665 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | ||| || || |||| | Sbjct 73239666 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAGAGCAGGAG 73239725 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| || || || || || |||||||| ||| | || || | ||| | Sbjct 73239726 GAATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTATTCGAGGGTTCAA 73239785 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || || || | ||||| | || ||||||||||| Sbjct 73239786 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 73239837 >seq21 Length=149150640 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 192333 ATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391 ||| | ||||| ||| ||| || || || | ||||| || || ||| | || |||| || Sbjct 2777381 ATGAAGAGTAGGCTCCTTTTGA-ATGTTGCAGTCAGACAAAGTACGTCCGTCTTCCAGTT 2777323 Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451 | | ||||||||||| | ||| || |||||||| || |||||||| ||||| || || | Sbjct 2777322 GCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCT 2777263 Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511 | |||||||| | | |||||| | ||| | || || || || || || || Sbjct 2777262 TGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAATCTCAAGGGTGATAGTCTTCCCCC 2777203 Query 192512 TTAATGTTTTAATAAATATCTGCATTTT 192539 ||| ||||| | || ||||||||||| Sbjct 2777202 TTAGGGTTTTCACGAAAATCTGCATTTT 2777175 >seq16 Length=77216781 Score = 96.9 bits (106), Expect = 7e-15 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 192311 CACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATA 192370 |||| | ||| | ||||| ||||| | ||||| |||||| ||||| || ||| | Sbjct 10305048 CACCACGAAGTCTCAATACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAAA-- 10304991 Query 192371 ATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTA 192430 || ||| |||| |||| ||| || ||||||||||| |||||| || |||| || | Sbjct 10304990 --GTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTCTGCCGACCAGGAGGAA 10304933 Query 192431 TTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTT 192490 ||||||| ||| | || || || | |||||| ||| | || || | ||| | | Sbjct 10304932 TTCCTTCCTTAACCTGGATCTTGGCCTATACATTTTCTATTGTGTCCGAGGGTTCACCCT 10304873 Query 192491 CTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || ||||| || || || | ||| | | || ||||||||||| Sbjct 10304872 CGAGGGTGATGGTCTTCCCTGTAAGGGTTATCACGAAAATCTGCATTTT 10304824 >seq10 Length=92844088 Score = 96.9 bits (106), Expect = 7e-15 Identities = 151/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 192333 ATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391 ||| | ||||| ||| ||| || || | || ||||| || || | | |||| |||| || Sbjct 50687833 ATGAAGAGTAGACTCCTTTTGA-ATGTG-TAGTCAGACAAAGTACATCCATCCTCCAGTT 50687776 Query 192392 G--TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTAT 192449 | ||| | ||||||||| | ||| || |||||| || |||||||| ||||| || || Sbjct 50687775 GCTTTTGCTAGCAAAGATCAGTCTTTGCCCATCAGGAGGAATTCCTTCCTTATCCTGGAT 50687716 Query 192450 TTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACC 192509 || |||||||| || | | |||||| | ||| || || || || ||||| || || Sbjct 50687715 CTTGGCCTTTACATTT-TTGTCGTATCTGAGGGTTCAACCTCGAGGGTGATGGTCTTCCC 50687657 Query 192510 AGTTAATGTTTTAATAAATATCTGCATTTT 192539 || | ||||| | || ||||||||||| Sbjct 50687656 TGTAAGGGTTTTCGTGAAAATCTGCATTTT 50687627 Score = 91.5 bits (100), Expect = 3e-13 Identities = 159/231 (69%), Gaps = 13/231 (6%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || || || || |||| Sbjct 27013234 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAG 27013292 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | |||| |||||||| || ||||||||||| | ||| || |||||||| | Sbjct 27013293 A-----------CATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 27013341 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| | | | | | | ||| | Sbjct 27013342 GAATTCCTTCCTTATCCTGGATATTGGCCTTTACATTTTCTGTTGTGTTCAAGGGTTCAA 27013401 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | || || || ||||| || || || | ||||| | || |||||||||| Sbjct 27013402 CCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTT 27013452 >seq17 Length=95684472 Score = 87.8 bits (96), Expect = 4e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || |||| Sbjct 65241140 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 65241082 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || | | |||| |||| ||| || ||||||||||| || || ||| |||| | Sbjct 65241081 ACAAAGTCCATGCATCTTCCAGTTGCTTGCCAGCAAAGATCCCCCTTTGCTGAGCAGGAG 65241022 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || | |||||||| ||| | ||| || | ||| | Sbjct 65241021 GAATTCCTTCCTTATCCTGGATCTCGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAA 65240962 Query 192488 CTTCTAGAGTAATGG 192502 | | || || |||| Sbjct 65240961 CATGGAGGGTGATGG 65240947 >seq3 Length=185818997 Score = 84.2 bits (92), Expect = 4e-11 Identities = 159/230 (69%), Gaps = 8/230 (3%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| ||| | || || | ||| | ||| | ||| ||| || || || || |||| Sbjct 183602139 ACCACCAGGAAGTCTCAACACAAGATGAAGAGTGGGCTCCTTTCGA-ATGTTGTAGTCAG 183602081 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | || | | |||| |||| ||| || ||||||||||| | |||||| | |||||| | Sbjct 183602080 ACA--GTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTCATCAGGAG 183602023 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||||||| ||||| || || || |||||||| ||| | ||| | ||| | Sbjct 183602022 GAATTCCTTGCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCACAGGTTCGA 183601963 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | || || || ||||| || || || | ||| || || |||||| || Sbjct 183601962 CCTCGAGGGTGATGGTCTTCCCTGTAA----TTTTATGAAAATCTGCGTT 183601917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980888540662800