Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq7 131 3e-25 seq15 122 2e-22 seq8 118 2e-21 seq21 104 4e-17 seq16 104 4e-17 seq10 89.7 9e-13 seq6 87.8 3e-12 seq9 86.0 1e-11 >seq7 Length=169600520 Score = 131 bits (144), Expect = 3e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 127523831 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 127523772 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | ||| || || Sbjct 127523771 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 127523712 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| |||| || Sbjct 127523711 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGA 127523652 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 127523651 GGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 127523592 >seq15 Length=111343173 Score = 122 bits (134), Expect = 2e-22 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 72888083 TTTCTTAGCACCACCACGAAGTCTCAACACGAGATGAAGAGTAGACTCCTTTTGAATATT 72888142 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | ||| || || Sbjct 72888143 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 72888202 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || ||||||| ||||| || || | | |||||| ||| |||||||| Sbjct 72888203 ATCAGGAGGAATTCCTTTCTTATCCTGGATCTCGGCCTCTACATTTTATATCGTATCTGA 72888262 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | || || || ||||| || || | | ||||| ||||| ||||||||||| Sbjct 72888263 GGGTTCAGCCTCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCATGAAAATCTGCATTTT 72888322 >seq8 Length=144306982 Score = 118 bits (130), Expect = 2e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 73239598 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 73239657 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | ||| || | Sbjct 73239658 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAG 73239717 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 |||| || |||||||| || || || || || |||||||| ||| |||| || Sbjct 73239718 AGCAGGAGGAATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTATTCGA 73239777 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 73239778 GGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 73239837 >seq21 Length=149150640 Score = 104 bits (114), Expect = 4e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || | |||| | ||||| || | | ||| | ||||| ||| || ||| || Sbjct 2777414 TTTCTTAGCAACACCACAAAGTCTCAACAAAAGATGAAGAGTAGGCTCCTTTTGAATGTT 2777355 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 | || || |||| ||| |||| |||| ||| | |||||||| || | ||| || || Sbjct 2777354 GCAGTCAGACAAAGTACGTCCGTCTTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTG 2777295 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| | |||||||| Sbjct 2777294 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGCCGTATCTGA 2777235 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | || || || || || || || ||| ||||| | ||| ||||||||||| Sbjct 2777234 GGGTTCAATCTCAAGGGTGATAGTCTTCCCCCTTAGGGTTTTCACGAAAATCTGCATTTT 2777175 >seq16 Length=77216781 Score = 104 bits (114), Expect = 4e-17 Identities = 167/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || | |||| | ||||| ||||| ||||| | ||||| |||||| |||||| Sbjct 10305059 TTTCTTAGCAGCACCACGAAGTCTCAATACAAAATGAAGAGTAGACTCTTTTTGAATATT 10305000 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || |||| ||| | || |||| ||| || |||||||| || |||||| | Sbjct 10304999 GTAGTC----AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTCTGCCG 10304944 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 |||| || |||||||| ||| | || || || | |||||| ||| || || || Sbjct 10304943 ACCAGGAGGAATTCCTTCCTTAACCTGGATCTTGGCCTATACATTTTCTATTGTGTCCGA 10304884 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | || || || ||||| || || || | ||| | | ||| ||||||||||| Sbjct 10304883 GGGTTCACCCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTATCACGAAAATCTGCATTTT 10304824 >seq10 Length=92844088 Score = 89.7 bits (98), Expect = 9e-13 Identities = 167/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| |||| || | | ||| | ||||| ||| || ||| | Sbjct 50687866 TTTCTTAGCACCACCATGAAGTGTCAACGCAAGATGAAGAGTAGACTCCTTTTGAATGTG 50687807 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTG--TTTACCAGCAAAAATTAATCTCTGT 171950 || || || |||| | | | || |||| ||| ||| | |||||| || | ||| || Sbjct 50687806 -TAGTCAGACAAAGTACATCCATCCTCCAGTTGCTTTTGCTAGCAAAGATCAGTCTTTGC 50687748 Query 171951 TGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCT 172010 ||||| || |||||||| ||||| || || || |||||||| || | |||||| Sbjct 50687747 CCATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTT-TTGTCGTATCT 50687689 Query 172011 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || | ||| || || || || ||||| || || || | ||||| |||| ||||||||| Sbjct 50687688 GAGGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCGTGAAAATCTGCATT 50687629 Query 172071 TT 172072 || Sbjct 50687628 TT 50687627 >seq6 Length=180051392 Score = 87.8 bits (96), Expect = 3e-12 Identities = 161/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||||| || || | | |||| | ||| || ||| ||||| || || Sbjct 135986977 ACCACCACGAAGTCTCAACACAAGAC---AAGTGGACTCCTTTTGAATGTTATAGTCAGA 135987033 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT---CTGTTGGTCAGG 171958 |||| | | |||| |||| ||| || |||||||| || | ||| || |||||||| Sbjct 135987034 CAAAGCACATCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTCACTACTGGTCAGG 135987093 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 | |||||||| ||||| || || || ||||||||| | | |||| | | ||| Sbjct 135987094 AGAAATTCCTTCCTTATCCTGGATCTTGGCTTTTACATT--TCCTTGTATTCAAGGGTTC 135987151 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || |||| |||| ||| | | || | | | ||||| ||||||||||| Sbjct 135987152 AACCTCAAGAGCGATGGCTTTCTCCATAAAGGGTGTTATGAAAATCTGCATTTT 135987205 >seq9 Length=129882849 Score = 86.0 bits (94), Expect = 1e-11 Identities = 228/327 (70%), Gaps = 30/327 (9%) Strand=Plus/Plus Query 126957 tatttataaataatgaatattgataaatgtattaatgaatatgataaacctatatattat 127016 ||| |||| ||||| |||| || || || || ||||| ||||| |||||| ||| Sbjct 8547437 TATGTATATATAATATATATACGTATATATAATATATAATAT-ATAAA--TATATAATAT 8547493 Query 127017 acttac-tatgatttatatagaaatatgaatgatataatttacaat-tatgata---ata 127071 | ||| ||| ||||||| |||||| || ||||||| || || ||| ||| | | Sbjct 8547494 A--TACGTATATATTATATATAAATATAAA--ATATAATATATAAAATATAATATATAAA 8547549 Query 127072 ATATTGT-TAAAACATATATGGATATTTTATTATCTCAAATACAATTTTTATCAACTATA 127130 |||| | || | |||||| |||| ||| || | ||||| ||| | || || |||| Sbjct 8547550 ATATAATATATATTATATATAAATATAATAT-ATATAAAATATAATATATAAAAAATATA 8547608 Query 127131 A-ATATTaaaaaaaTATGTAATACATATTCGAATAGAATGGTACATATATTATATATAGG 127189 | |||||| | ||| || ||||| ||| |||| || ||||||||||||||| Sbjct 8547609 ATATATTATATAAA-ATATAATATATAA---AATATAAAATATCATATATTATATATA-- 8547662 Query 127190 ATCATCTAAAGCGTATCAT---TTCAATATATTGAATAATTTATATAAAAATTTAA--CT 127244 || || ||| | |||||| | |||||| | ||||| ||||| | | | || | Sbjct 8547663 AT-ATATAATGTATATCATATATAAAATATAATATATAATGTATATTATATATAAAATAT 8547721 Query 127245 AATATACAATGGTAT-TTTTATGATAT 127270 |||||| ||| |||| |||||| |||| Sbjct 8547722 AATATATAAT-GTATATTTTAT-ATAT 8547746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901914530462400