Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq13 140 3e-28 >seq13 Length=108979918 Score = 140 bits (154), Expect = 3e-28 Identities = 723/1135 (64%), Gaps = 59/1135 (5%) Strand=Plus/Plus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | |||| ||| || ||||| ||| | ||| |||| | || ||| | || | Sbjct 64126064 ATGCCTTCTATGTGGCAGACCTGGGAGACATTCTAAAGAAACATCTGAGGTGGTTAAACG 64126123 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323 || | ||| |||| || ||||| || || || | || | || | || | Sbjct 64126124 CTCTCCCTCGTGTCACCCCCTTTTATGCAGTCAAATGTAATGATAGCAAAGCCA-TCATG 64126182 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 |||||||| ||||| | || || ||||||||||| || ||| || || ||||| Sbjct 64126183 AAGACCCTTGCTGCTGTGGGGACAGGATTTGACTGTGCTAGCAAGACTGAAATACAGTTG 64126242 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 |||| | |||| | || | |||| ||||| | | ||| ||||||||||| || Sbjct 64126243 GTGCAGAGTCTGAGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCTTGTAAACAAGTA 64126302 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || | | |||||| ||| | | |||||| | ||||||||||||||||||||| Sbjct 64126303 TCTCAAACTAAGTATGCTGCTAATAATGGAGTCCAGATGATGACTTTTGATAGTGAAGTT 64126362 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 ||| | | ||| ||| | || | | || ||| |||| || ||||| Sbjct 64126363 GAGTTGATGAAAGTTGCCAGAGCACATCCAAAAGCAAAGTTGGTTTTGCGGATTGCCACT 64126422 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 ||||| || || ||| | | || ||||| || || | || | | | ||| Sbjct 64126423 GATGATTCCAAAGCAGTCTGTTGTCTCAGTGTTAAATTCCGTGCCACGCTCAGAAATAGC 64126482 Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683 | ||| | || ||| ||| | | | || || | || |||||||||||| Sbjct 64126483 AGGCTCCTTTTGGAAAGGGCAAAAGAGGTGAATATCGATGTTGTTGGTGTCAGCTTCCAC 64126542 Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAGA 20743 | || |||||||| | ||| | || | | | | || || |||| || | | Sbjct 64126543 GCAGGAAGTGGCTGTACCGATCCTGAGACCTTCGTGCAGGCAATCTCTGATACCCGCTGT 64126602 Query 20744 GCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGGTGGCG 20801 | ||||||| | || ||||| | || || |||||| || | |||||||| || | Sbjct 64126603 GTTTTTGACATGGG--GGCTGAGGTTGGTTTCAGCATGTATCTGCTTGATATTGGCGGTG 64126660 Query 20802 GCTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACAT-TGCAGAAGTCATT 20857 ||||| || ||||| |||| || ||| | ||||| || || ||| | | || Sbjct 64126661 GCTTT-CCTGGATC--TGAGGATGTGAAGCTTAAATTTGAAGAGATCACCAGCA-TAATC 64126716 Query 20858 AACGCGGCCTTGGAAAGGCATTTTC---CAGATGATGCCAACCTGACAATTATTGGTGAA 20914 ||| | || ||||| || |||||| |||| || ||| ||| || | | | Sbjct 64126717 AACCCAGCGTTGGACAGATATTTTCTGTCAGACTCTG---GAGTGAGAATCATAGCTAAG 64126773 Query 20915 CCTGGCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTA--AAA 20972 |||||||| ||||| | | | || || | || | || || | | | || | | ||| Sbjct 64126774 CCTGGCAGATACTATGTTGCATCAGCTTTCACACTTGCGGTTAATATCATCTCCAAGAAA 64126833 Query 20973 AGTGTGTTGAAG--ACA------CTC-----CTGGAGATAAA------------AAGTTT 21007 | ||| || ||| ||| ||| || |||| || | ||| Sbjct 64126834 ATTGTATTAAAGGAACAGACTGGCTCTGATGATGAAGATGAATCGAGTGAACAGACCTTT 64126893 Query 21008 ATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCT 21067 |||| |||||| ||| |||| |||||||| ||||| |||||| | | | | || || Sbjct 64126894 ATGTGTTATGTGAATTATGGTGTCTATGGATCATTTAATTGCATACTGTATGATCACGCA 64126953 Query 21068 CGTCCTATGCCTATGCTGCTTAAAGAAAAACGCCTTGA--AGACA--AAG-ACTATGTTT 21122 | | | ||| | |||| ||||| | ||| | ||| | ||| | ||| | Sbjct 64126954 CATGTAAAGCCCCTTCTGC-AAAAGAGA----CCTAAACCAGATAAGAAGTATTATTCAT 64127008 Query 21123 CTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGC 21182 | ||||| ||||| || | || |||||| | ||| | |||||| |||| ||||| |||| Sbjct 64127009 CCAGCATATGGGGACCAATATGTGATGGCCTTGATCGGATTGTTGAGCGCTGTGACCTGC 64127068 Query 21183 CAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCA 21242 | || | || ||||| || ||| | | |||||||||||||||||||||| || | Sbjct 64127069 CCGAAATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGCGCTTACA-CTGTTGCT 64127127 Query 21243 GCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCAG 21296 ||| | || || || || ||||||| | ||| | | ||||||| || |||| Sbjct 64127128 GCTGCCTCTACGTTCAATGGCTTCCAGAGGCCGGTGATCTACTATGTGATGTCAG 64127182 Score = 89.7 bits (98), Expect = 5e-13 Identities = 129/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | || |||||| | ||| | |||||| |||| ||||| ||| Sbjct 10442011 TCCAGCATATGGGGACCAACATGTGATGGCCTTGATCGGATTGTTGAGCGCTGTGACCTG 10441952 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || || | || ||||| || ||| | | |||||||||||||| ||||||| || | Sbjct 10441951 CCCGAAATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGTGCTTACA-CTGTTGC 10441893 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGC-ACTATGTTATTTCAG 21296 ||| | || || || || ||||| ||| || | || | | ||||||| || |||| Sbjct 10441892 TGCTGCCTCTACGTTCAATGGCTT-CCAGAGGCCGACGATCTACTATGTGATGTCAG 10441837 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 20372 GAGATTCAGTTACTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCT 20431 || || ||||| |||| |||||||| || | |||| ||||| | | ||| |||||| Sbjct 10444574 GAAATACAGTTGGTGCAGAATCTGGGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCT 10444515 Query 20432 TGTAAGCAGCCTTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTT 20491 ||||| || || || || | |||||| ||| | | |||||| | ||||||||||| Sbjct 10444514 TGTAAACAAGTATCTCAAATTAAGTATGCTGCTAATAATGGAGTCCAGATGATGACTTTT 10444455 Query 20492 GATAGTGAAG 20501 |||||||||| Sbjct 10444454 GATAGTGAAG 10444445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461895794855040