Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 2e-14 >seq4 Length=172585720 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 58385 TGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATACTTAGG 58444 |||||||||| | | |||||||| | || || || || ||||||||||| || || || Sbjct 78164980 TGGTGGTACTTTGTTTCTAAAGGAGTTGAGTATTTGGACACAGTGTTTTTTATTCTGAGA 78164921 Query 58445 AAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTTACTTTA 58504 || || || || ||| || || || || |||||||| | ||| |||||||| || Sbjct 78164920 AAGAAAAACAACCAGGTTTCTTTCCTTCATGTGTATCATCACTGTACGATGTTTACCTTG 78164861 Query 58505 GGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 | ||| | || ||||| ||| |||||||||| || Sbjct 78164860 TGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 78164826 Score = 84.2 bits (92), Expect = 4e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 |||||||| || || ||| ||||||| ||||||||||| |||||||| || ||||| Sbjct 78162712 GCATTTTTTGGAGCCCAGATGAATTCCTTTATCCATGTGATTATGTACTCATACTATGGG 78162653 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 | || || | ||| | | || | || ||| | |||||||| || ||||| ||||| Sbjct 78162652 TTAGCTGCATTTGGCCCATGGATTCAGAAATATCTTTGGTGGAAACGATACCTGACTATG 78162593 Query 58661 ATGCAATTGGT 58671 ||||| |||| Sbjct 78162592 TTGCAACTGGT 78162582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 900195869198080