Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq15 224 1e-53 seq2 194 2e-44 seq4 145 9e-30 seq6 84.2 3e-11 >seq15 Length=111343173 Score = 224 bits (248), Expect = 1e-53 Identities = 607/921 (66%), Gaps = 11/921 (1%) Strand=Plus/Minus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 ||||| | | || ||| || | |||||||| || || | ||| ||| | || ||| Sbjct 92764731 TTATGCCTCAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAAC 92764672 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || || |||| ||| || || || ||||| || | || || | ||| || Sbjct 92764671 TTATTGGCAAACAAGTGGTGT---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCAAAA 92764615 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 | |||||| || |||||||| || || ||| || || || |||| || | | ||| Sbjct 92764614 ATGCACACCGAGCGCACGTGGACTCCATCGCAGGGAGGGTAGGGGGCACCCTTGGAAACA 92764555 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || ||||| ||||||||||||| || ||||| | | || |||||||| || ||| Sbjct 92764554 TCACCCTCAAAGTATTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCG 92764495 Query 162307 TACTTGTACACTGACGGCACG-GCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||| | ||| | | | | | || || || | || | ||||| | || ||||| Sbjct 92764494 TACTTATGG-CTGGCAGAAAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGTGGCCCA 92764436 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 || | || || || || || || || | || ||||||||| |||| | || ||| Sbjct 92764435 GAGATACTCATCAGGGCTGTATGTGTCTTGCGCCCACTCCATAAACTTCTGGATGTTTTC 92764376 Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485 || | ||| | || || || ||| | || | |||||| || || |||||||| Sbjct 92764375 ATTCTGTAGTACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAAA 92764316 Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545 | ||| | | ||||| || |||| | || ||||| | | |||| | Sbjct 92764315 AAGAGGTGTTTCGAGCGGAGGAAGCATTTTGACAGTCCCTGTGTTTGTCAGCTTTCCATT 92764256 Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTA-GACGGGTGTTCGGTCT 162604 |||||| | | | ||| ||||||| | |||| ||| | | | || || | Sbjct 92764255 AACGACCTCATACCGCTTTTTCCACCTTTCT-TCTTTATGGGATGGCATCCTCTCCGTTT 92764197 Query 162605 CTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAA 162664 | || ||||| ||| || ||| |||| | || || ||||| ||||| |||| Sbjct 92764196 CCAGGCTGTTTTCTCCCATTAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAA 92764137 Query 162665 GGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACA 162724 ||||| || | || || ||||| || | || ||||| || | || | | | || | Sbjct 92764136 TAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATTGCATAGA 92764077 Query 162725 GATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCT 162784 | |||| | ||||| || || ||||| || |||||||| || || || || || |||| Sbjct 92764076 GGTCCTTCATGCAGTTGAGGTCAGCCTGAACCCGACTCCATGATGCATAAACCACACTCT 92764017 Query 162785 CCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTG 162844 |||| | |||| ||||||||||| |||||| ||| | || |||||||| || | Sbjct 92764016 CCAATCGGCTGGCCACAAAGACATTACTGAAACAGGAAGCGATGCCCATCACTGCAGCTA 92763957 Query 162845 AGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTA 162902 | | ||| || | ||| | || || || | ||| || | ||||||||| || Sbjct 92763956 AATAGGAATC--CTCGGATTTTGTGTCCACATGAATGCAATAGAAATTCTGAGGCATATA 92763899 Query 162903 GATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGC 162962 |||||||||||| | || || | ||| || ||||| || || ||||| |||||||| || Sbjct 92763898 GATGGCCCTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGC 92763839 Query 162963 TATGGGGAACTCAGCCTCCTC 162983 ||| || ||||| ||||| || Sbjct 92763838 TATTGGAAACTCTGCCTCTTC 92763818 >seq2 Length=204787373 Score = 194 bits (214), Expect = 2e-44 Identities = 238/325 (73%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 |||||| || || |||| | || || || || || || ||||| ||||| || | || Sbjct 33410456 CATAGACCGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGAC 33410397 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| ||||| ||||||| |||| | ||||| || || | || | ||| || Sbjct 33410396 ACATGTAACACCCTTCATCCTCCAGGGTGATATTCCAGAAGGTGATGGTTGTGTTTTGGA 33410337 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || |||||||| | | |||||| || | |||||||| || || || || | Sbjct 33410336 GTCCCAGCTGGGTAATGTTTATCTTGTCCTTATAGGCAGGCTGGATCACCACCCCATGGT 33410277 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||||| ||| |||||||||| ||||| ||| || | |||||||| || || | Sbjct 33410276 TCTCGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAA 33410217 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | | ||||| | | | |||| |||||||||||||| |||||||| |||| || | Sbjct 33410216 TCAGGACTTCCTGGGCATTTTGCAGAGAGCATCTTAAGGAAGCAGGAGTGTACAGCTGCT 33410157 Query 172071 CCCTTTCGTCTTGCGTTACCACCTG 172095 | ||||| || || || ||||| || Sbjct 33410156 CTCTTTCATCCTGGGTCACCACTTG 33410132 Score = 120 bits (132), Expect = 4e-22 Identities = 161/221 (73%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 171506 GTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTT 171565 ||||| | | ||| || |||||||||| ||| | || | ||| |||||||||| | Sbjct 33412997 GTTTGCTTAAAGTCAGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT---TC 33412941 Query 171566 CCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTA 171625 ||||| ||| | ||||| ||||| || || || ||||| |||||||| |||||||| || Sbjct 33412940 CCCACCTGATTCTTAGGGTCTTTGACATGGAGGATGCTGGTAACAGACGTAGTCCCATTT 33412881 Query 171626 CGATGTAGAACG-GTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATAT 171684 | || ||| | || ||||||||||| | || || | | || ||||| || || Sbjct 33412880 GGGTG-AGACAGAGTCACTGTACTATTTTCAAACCCTGACCGAGGGACCTTCCAGAAGAT 33412822 Query 171685 AACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 | || ||||| | ||||| ||||||||||| ||||||| Sbjct 33412821 CATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATGTTTA 33412781 >seq4 Length=172585720 Score = 145 bits (160), Expect = 9e-30 Identities = 437/663 (66%), Gaps = 15/663 (2%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| |||| | || || | | | Sbjct 94632116 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCGACTTCCTTCAGATACTTTG 94632057 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | ||||| Sbjct 94632056 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATGTAAT 94631997 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || ||||| |||| ||| || || | ||||| | || |||| || || Sbjct 94631996 TCTCATAGTTTTCTCTAGATGGTCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 94631937 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || ||| |||| | || || ||||| | ||||| |||| Sbjct 94631936 TGTAGAGCTTTTCCGTGATGTAATCCTTGTGGATTGAATTTTCAAAGGAAAGATAAAATT 94631877 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||| | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 94631876 TACAAGTAGATATGGTA--GGAATCAAATTTTTATCATTGACATATTCTCCAAATGCTTG 94631819 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || ||||| ||| || || || || | | Sbjct 94631818 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 94631760 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| || ||||| |||||||| || || Sbjct 94631759 GCTCAGGGTTCCAGTTACTCACAACCCAGCACACCAACTT-CTCTTTGCTTGGCAC---- 94631705 Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | || || | | | || | ||| | | ||||| ||||| || ||||| || Sbjct 94631704 TTCAAACACAAAGGGATTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTGA 94631645 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC-TTGTTTGAAGGGGC 177420 |||||| | || || | || || || || | || || || || | ||| ||| | Sbjct 94631644 GTCGCGGCGATAAGTCAGAGTCAGGTTAAACAAGTGCTCAATGCCACTCTTTTGAGGAG- 94631586 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCG 177480 ||| | | || || || || |||||||| ||||| || || |||| ||| || | || | Sbjct 94631585 TGTGAGTTGGTGACTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCTTGCT 94631526 Query 177481 TAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTT 177540 ||||| | | |||| ||| || |||| ||| || | | || |||| || || Sbjct 94631525 GAGGTAAATTTGTCAGATCCCAACTGATGTCTCGGTGATGGATCAGAACTGCATGGGATT 94631466 Query 177541 TGT 177543 ||| Sbjct 94631465 TGT 94631463 >seq6 Length=180051392 Score = 84.2 bits (92), Expect = 3e-11 Identities = 224/338 (66%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 162646 ATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCA- 162704 || ||||| |||| |||| |||||| || | || || || || | | ||||||| Sbjct 23059078 ATTTCTAGGTTGGATTTAATGGGAAAATCCATACCACAAAGTTTTACCAAGAATTTCCAG 23059137 Query 162705 CTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCA 162764 | | | | | | | | || || || | | ||||| || | ||||| || | ||||| Sbjct 23059138 CCTGAAG-TCATTGCTTAGAGGTCATTCATGCAGTTGAGGTTAGCCTGAACCTGGCTCCA 23059196 Query 162765 CGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAAC 162824 || || || || || ||||||| | | || |||||||| || |||||| | | Sbjct 23059197 TGATGCATAAACCACCGTCTCCAATCAGCTCGCCACAAAGACTTTACTGAAACAGAATGC 23059256 Query 162825 TATCCCCATCACGGCCAGTGAGAAC--ATCGGGTCCGCTTTCCTATCTACGTGTACGCAG 162882 || |||||||| || | | || ||| || | ||| | || ||||| | || Sbjct 23059257 AATGCCCATCACTGCAGCTAAAAAGGAATCC--TCTGATTTTTTGTCCACGTGAATGCGA 23059314 Query 162883 TATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGG 162942 || | ||||||| | |||||||||||||||| || | | ||| || ||||| || Sbjct 23059315 TAGAAATTCTGAAGCATATAGATGGCCCTCAGTAGCCTGTAAAGCATTTCAATCTTGTGA 23059374 Query 162943 TGTACCACGATAGAATACGCTATGGGGAACTCAGCCTC 162980 || || | |||||||| ||| | | ||||| ||||| Sbjct 23059375 TGAACTGCTATAGAATATGCTGTTTGAAACTCCGCCTC 23059412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576373302668800