Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq7 120 7e-22 seq8 118 2e-21 seq17 104 5e-17 seq15 104 5e-17 seq10 102 2e-16 seq16 100 7e-16 seq11 98.7 2e-15 seq21 95.1 3e-14 seq3 89.7 1e-12 >seq7 Length=169600520 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| | || || ||| || || | | ||| Sbjct 127523610 AAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCGGATATGATAGAAAAT 127523669 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || |||||||| ||||| Sbjct 127523670 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTT 127523729 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || ||||| | || || |||||| Sbjct 127523730 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAATATTCAAAAGGAGTCT 127523789 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 127523790 ACTCTTCATCTTGTGTTGAGACTTCG 127523815 Score = 109 bits (120), Expect = 1e-18 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||||||||| || || | ||| ||||||| |||||| Sbjct 127523815 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTA 127523756 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||| ||||| || || ||||| || | ||| ||| Sbjct 127523755 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGA 127523711 >seq8 Length=144306982 Score = 118 bits (130), Expect = 2e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| | || || ||| || | || | ||| Sbjct 73239819 AAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCGAATACGATAGAAAAT 73239760 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT-CAAAGACTTATCTT 206303 |||||| ||||| || || || ||||||||| || | | || |||||||| ||||| Sbjct 73239759 GTAAAGGCCAAGATCCAGGAGAAGGAAGGAATTCCTCCTG-CTCTGCAAAGACTGATCTT 73239701 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||| ||||||||||| | |||||| | || ||||| | || || ||||| Sbjct 73239700 TGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAATATTCAAAAGGAGTC 73239641 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| ||||| ||||||||||| Sbjct 73239640 TACTCTTCATCTTGTGTTGAGACTTCG 73239614 Score = 105 bits (116), Expect = 2e-17 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||||||||| || || | ||| ||||||| |||||| Sbjct 73239614 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTA 73239673 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTG 204852 | |||||||||||| ||||| || || ||||| || | ||| Sbjct 73239674 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTG 73239714 >seq17 Length=95684472 Score = 104 bits (114), Expect = 5e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||||||||| || || | ||| ||||||| ||||||| Sbjct 65241133 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTC 65241074 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | | |||||||||| ||||| || || ||||| || ||| ||| Sbjct 65241073 CATGCATCTTCCAGTTGCTTGCCAGCAAAGATCCCCCTTTGCTGA 65241029 Score = 93.3 bits (102), Expect = 1e-13 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 206255 AGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGC 206314 |||| || || || ||||||||| || | ||||| ||||| || || |||| Sbjct 65240998 AGATCCAGGATAAGGAAGGAATTCCTCCTGCTCAGCAAAGGGGGATCTTTGCTGGCAAGC 65241057 Query 206315 AGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACC 206374 | ||||||||| | |||||||| | || ||||| | || || |||||||||||||| | Sbjct 65241058 AACTGGAAGATGCATGGACTTTGTCTGACTACAATATTCAAAAGGAGTCTACTCTTCATC 65241117 Query 206375 TTGTTTTGAGACTTCG 206390 |||| ||||||||||| Sbjct 65241118 TTGTGTTGAGACTTCG 65241133 >seq15 Length=111343173 Score = 104 bits (114), Expect = 5e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || |||||||||||||| || || | ||| ||||||| |||||| Sbjct 72888099 CGAAGTCTCAACACGAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTA 72888158 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||| ||||| || || ||||| || | ||| ||| Sbjct 72888159 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGA 72888203 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 206255 AGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGC 206314 |||| || || || |||||||| || || |||||||| ||||| || || |||| Sbjct 72888234 AGATCCAGGATAAGAAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGC 72888175 Query 206315 AGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACC 206374 | ||||||||||| | |||||| | || ||||| | || || |||||||||||||| | Sbjct 72888174 AACTGGAAGATGGACGTACTTTGTCTGACTACAATATTCAAAAGGAGTCTACTCTTCATC 72888115 Query 206375 TTGTTTTGAGACTTCG 206390 | || ||||||||||| Sbjct 72888114 TCGTGTTGAGACTTCG 72888099 >seq10 Length=92844088 Score = 102 bits (112), Expect = 2e-16 Identities = 149/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||| || || ||||| | || || ||| || || || | | || Sbjct 50687645 AAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCCTCAGATAC-GACAAAAAT 50687703 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || | |||||||| ||||| Sbjct 50687704 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATGGGCAAAGACTGATCTTT 50687763 Query 206305 GCCGG--AAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 || | |||||| |||| |||||| | |||||| | || |||| | | || || |||| Sbjct 50687764 GCTAGCAAAAGCAACTGGAGGATGGATGTACTTTGTCTGACTACA-CATTCAAAAGGAGT 50687822 Query 206363 CTACTCTTCACCTTGTTTTGAGACTTC 206389 |||||||||| |||| |||| ||||| Sbjct 50687823 CTACTCTTCATCTTGCGTTGACACTTC 50687849 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/206 (69%), Gaps = 11/206 (5%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||| || || ||||| | || || ||| | ||||| ||| Sbjct 27013435 AAAACCCTTACAGGGAAGACCATCACCCTTGAGGTTGAACCCTTGAACACAACAGAAAAT 27013376 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || || || || || ||||||||| || || |||||||| ||||| Sbjct 27013375 GTAAAGGCCAATATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTT 27013316 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| |||||||||| | || |||||| | || || |||||| Sbjct 27013315 GCTGGCAAGCAATTGGAAGATGT-----------CTGACTACAACATTCAAAAGGAGTCT 27013267 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 27013266 ACTCTTCATCTTGTGTTGAGACTTCG 27013241 >seq16 Length=77216781 Score = 100 bits (110), Expect = 7e-16 Identities = 147/205 (72%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 206187 AACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT 206246 ||| || ||||| || || ||||| | || | ||| || |||||| | ||| || Sbjct 10304844 AACCCTTACAGGGAAGACCATCACCCTCGAGGGTGAACCCTCGGACACAATAGAAAATGT 10304903 Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC-GGACGCTCAAAGACTTATCTTCG 206305 | || ||||| || | || ||||||||| || || || || |||| ||||| | Sbjct 10304904 ATAGGCCAAGATCCAGGTTAAGGAAGGAATTCCTCCTGGTCGG-CAGAGACCGATCTTTG 10304962 Query 206306 CCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTA 206365 | || ||||| ||||||||||| | ||||| || ||||| | || |||||||||| Sbjct 10304963 CTGGCAAGCAACTGGAAGATGGACGTACTTT----GACTACAATATTCAAAAAGAGTCTA 10305018 Query 206366 CTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||| |||| ||||||||||| Sbjct 10305019 CTCTTCATTTTGTATTGAGACTTCG 10305043 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 4/92 (4%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| |||| ||||||||||||||||| || | ||| |||| |||||| Sbjct 10305043 CGAAGTCTCAATACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGT----CAAAGTA 10304988 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 | |||||||||||| ||||| || || ||||| Sbjct 10304987 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGAT 10304956 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || ||||| |||||| ||||| Sbjct 16306624 AAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGTGACACCATCGAAAAT 16306565 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || || || || ||||| ||| || ||| || || || ||||| Sbjct 16306564 GTGAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCCGACCAGCAGAGGCTCATCTTT 16306505 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | || |||||| ||||||||||||| Sbjct 16306504 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCG 16306445 Query 206365 ACTCTTCACCTTGT 206378 || || |||||||| Sbjct 16306444 ACCCTGCACCTTGT 16306431 >seq11 Length=133663169 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| | || ||||| |||||| |||| Sbjct 125065023 AAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGTGACACCATCGAGAAT 125064964 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| || || || ||||| ||| || ||| || || | ||||| Sbjct 125064963 GTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGAGGTTGATCTTT 125064904 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||||||||| | || || | || |||||| ||||||||||||| Sbjct 125064903 GCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCC 125064844 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 125064843 ACCCTGCACCTGGT 125064830 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| || ||||| ||| || ||| || || || ||||| Sbjct 125065419 GTCAAGGCAAAGATCCAAGATAAGGAAGGCATTCCTCCCGACCAGCAGAGGCTGATCTTT 125065360 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||||||||| | || || | || |||||| ||||||||||||| Sbjct 125065359 GCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCC 125065300 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 125065299 ACCCTGCACCTCGT 125065286 Score = 91.5 bits (100), Expect = 3e-13 Identities = 100/132 (76%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 |||||||| ||| ||||| || ||||| || || ||| || || | ||||| || Sbjct 125065188 AAAGCAAA-GATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGTTGATCTTTGC 125065130 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 ||| || ||| ||||||||||| | || || | || |||||| |||||||||||||||| Sbjct 125065129 CGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAACATCCAGAAAGAGTCTAC 125065070 Query 206367 TCTTCACCTTGT 206378 || ||||| || Sbjct 125065069 CCTGCACCTGGT 125065058 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| || || ||||||||||||| || ||||||| || || | ||||||||| Sbjct 125065286 ACGAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 125065345 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||||||||| ||||| |||| Sbjct 125065346 AGCTGCTTTCCGGCAAAGATCAGCC 125065370 >seq21 Length=149150640 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| |||| || || || ||||||||| || ||| |||||||| ||||| Sbjct 6022426 GTAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 6022485 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || | |||| ||||||||||| | |||||| | ||||||||| || ||||||| Sbjct 6022486 GCTGTCGAGCAACTGGAAGATGGACGTACTTTGTCTGATTACAACACTCAAGAAGAGTCC 6022545 Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389 |||||||| | ||| |||||| ||| Sbjct 6022546 ACTCTTCATCATGTGTTGAGATTTC 6022570 >seq3 Length=185818997 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 ||||| || || ||||| | || || ||| | || || | ||| |||||| Sbjct 183601938 ACAGGGAAGACCATCACCCTCGAGGTCGAACCTGTGGATACGATAGAAAATGTAAAGGCC 183601997 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || |||||||| || || | || ||||| ||||| || || ||| Sbjct 183601998 AAGATCCAGGATAAGCAAGGAATTCCTCCTGATGAGCAGAGACTGATCTTTGCTGGCAAG 183602057 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| | || || | || |||||| | | || ||| | |||||||| Sbjct 183602058 CAACTGGAAGATGGATGTAC--TGTCTGACTACAACATTCGAAAGGAGCCCACTCTTCAT 183602115 Query 206374 CTTGTTTTGAGACTTC 206389 ||||| |||||||||| Sbjct 183602116 CTTGTGTTGAGACTTC 183602131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177509426130488