Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq4 105 2e-19 seq19 98.7 3e-17 seq17 98.7 3e-17 seq14 98.7 3e-17 >seq4 Length=172585720 Score = 105 bits (116), Expect = 2e-19 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 29269637 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 29269578 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 29269577 CCCGGGTTTCGGC 29269565 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 29205174 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 29205115 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 29205114 CCGGGTTTCGGC 29205103 Score = 102 bits (112), Expect = 3e-18 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCAAC 2827 || ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 29286150 GCCGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTTAAAGGTCCCTGGTTCAAT 29286091 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 29286090 CCCGGGTTTCGGC 29286078 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 29188982 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 29189041 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 29189042 CCGGGTTTCGGC 29189053 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 29437572 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 29437513 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 29437512 CCGGGTTTCGGC 29437501 Score = 93.3 bits (102), Expect = 1e-15 Identities = 67/75 (89%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGA--AGATCT-AAAGGTCCCTGGTTCA 2825 |||||| ||||||| |||||||||| ||||||||| ||| || |||||||||||||||| Sbjct 13494558 GCTGAAATAGCTCAATTGGGAGAGCGTTAGACTGACCAGACCTTAAAGGTCCCTGGTTCA 13494617 Query 2826 ACCCCGGGCTTCAGC 2840 |||||||| |||||| Sbjct 13494618 ACCCCGGGTTTCAGC 13494632 Score = 93.3 bits (102), Expect = 1e-15 Identities = 67/75 (89%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGA--AGATCT-AAAGGTCCCTGGTTCA 2825 |||||| ||||||| |||||||||| ||||||||| ||| || |||||||||||||||| Sbjct 29187974 GCTGAAATAGCTCAATTGGGAGAGCGTTAGACTGACCAGACCTTAAAGGTCCCTGGTTCA 29187915 Query 2826 ACCCCGGGCTTCAGC 2840 |||||||| |||||| Sbjct 29187914 ACCCCGGGTTTCAGC 29187900 Score = 89.7 bits (98), Expect = 2e-14 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||||||||||||||||||||||||||||||||||||||||| | || || Sbjct 77172968 AAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTTGATCCTGG 77172909 Query 2833 GCTT 2836 | || Sbjct 77172908 GTTT 77172905 >seq19 Length=53671032 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1179108 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1179049 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1179048 CCGGGTTTCGGC 1179037 >seq17 Length=95684472 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 76211019 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 76210960 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 76210959 CCGGGTTTCGGC 76210948 >seq14 Length=127894412 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 14523874 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 14523933 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 14523934 CCGGGTTTCGGC 14523945 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 14533003 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 14533062 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 14533063 CCGGGTTTCGGC 14533074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15800240977560