Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq11 134 1e-26 seq7 114 1e-20 seq8 107 2e-18 seq16 104 2e-17 seq21 100 3e-16 seq27331 87.8 2e-12 seq15 87.8 2e-12 >seq11 Length=133663169 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 125064391 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAA 125064450 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | ||| | || |||||||||| ||||||| ||| | | | Sbjct 125064451 GATCAACCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATT 125064510 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||| | ||||| || || || |||| || ||||| Sbjct 125064511 TTCAATAGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 125064570 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 125064571 GAAGATCTGCAT 125064582 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 125064619 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAA 125064678 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | ||| | || |||||||||| ||||||| ||| | | | Sbjct 125064679 GATCAACCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATT 125064738 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||| | ||||| || || || |||| || ||||| Sbjct 125064739 TTCAATAGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 125064798 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 125064799 GAAGATCTGCAT 125064810 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 125064847 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAA 125064906 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | ||||| || ||||||||| ||||||| ||| | | | Sbjct 125064907 GATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATT 125064966 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||| | ||||| || || || || | || ||||| Sbjct 125064967 CTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 125065026 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 125065027 GAAGATCTGCAT 125065038 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || ||||||||||| || | || ||| ||| | || |||||||| || || ||||| Sbjct 125064163 CTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCAGCAAA 125064222 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | ||| | || ||||| ||| ||||||| ||| | | | Sbjct 125064223 GATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTTGCCTTGACATT 125064282 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||||| | ||||| || || || || | || ||||| Sbjct 125064283 CTCAATGGTGTCGCTGGGCTCCACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTCAC 125064342 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 125064343 GAAGATCTGCAT 125064354 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 125065303 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAA 125065362 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||||| || ||||| || ||||||| ||| | | | Sbjct 125065363 GATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTTGCCTTGACATT 125065422 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| || ||||| Sbjct 125065423 CTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCAC 125065482 Query 35725 AAATATCTGCATT 35737 || ||||||||| Sbjct 125065483 GAAGATCTGCATT 125065495 >seq7 Length=169600520 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | ||| |||||||||||| ||||| || | | Sbjct 127523821 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 127523762 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| |||| | ||||| || | |||| Sbjct 127523761 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 127523702 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | | | || | ||| ||| Sbjct 127523701 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAACC 127523642 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || | ||||| || || ||||| | |||||||| || ||||||||| Sbjct 127523641 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATT 127523594 >seq8 Length=144306982 Score = 107 bits (118), Expect = 2e-18 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | ||| |||||||||||| ||||| || | | Sbjct 73239608 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 73239667 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| |||| | ||| | | | |||| Sbjct 73239668 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAGAGCAGGAGGA 73239727 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA---TTCC 35686 | | ||||| ||| |||||| ||| | | || | | ||| | |||| ||| Sbjct 73239728 ATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTAT---TCGAGGGTTCA 73239784 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 ||||| | ||||| || || ||||| | |||||||| || ||||||||| || Sbjct 73239785 ACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 73239838 >seq16 Length=77216781 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 16305992 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 16306051 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || || || || |||||| ||||| | | Sbjct 16306052 GATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCTTGGATCTTGGCCTTCACATT 16306111 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||||| ||||| || || || |||| |||||||| Sbjct 16306112 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCAC 16306171 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 16306172 GAAGATCTGCAT 16306183 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 16306220 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 16306279 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||| | || || || ||| |||||| ||||| | | Sbjct 16306280 GATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATT 16306339 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | ||||| |||| ||||| || || || |||| || ||||| Sbjct 16306340 TTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 16306399 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 16306400 GAAGATCTGCAT 16306411 Score = 102 bits (112), Expect = 7e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 16306448 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 16306507 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | |||| || ||||| ||| ||| || ||||| | | Sbjct 16306508 GATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACATT 16306567 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||| | ||||| || || || |||| || ||||| Sbjct 16306568 TTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 16306627 Query 35725 AAATATCTGCATTCTG 35740 || ||||||||| || Sbjct 16306628 GAAGATCTGCATTTTG 16306643 >seq21 Length=149150640 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 35511 CACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCA 35570 |||||| | ||||||| | ||| | ||| |||||||||||||||| | || | || Sbjct 2777403 CACCACAAAGTCTCAACAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACA 2777344 Query 35571 AGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAA 35630 | || || |||| ||||| |||| || ||||| |||| | ||||| || | ||||| Sbjct 2777343 AAGTACGTCCGTCTTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAA 2777284 Query 35631 CGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCT 35690 | ||||| ||| |||||| ||| | | || | |||| || | ||| | || Sbjct 2777283 TTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAATCT 2777224 Query 35691 CCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 | | ||||| || || ||| | | |||||||| || ||||||||| || Sbjct 2777223 CAAGGGTGATAGTCTTCCCCCTTAGGGTTTTCACGAAAATCTGCATTTTG 2777174 >seq27331 Length=523 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 272 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 331 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||| | || || || ||| |||||| ||||| | | Sbjct 332 GATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATT 391 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | || ||||| || | |||||||||| ||||| || || | |||| || ||| Sbjct 392 TTTCATGGTGTCCCTGGGCTCCACCTCCAGGGTGATTGTCTTGCTGATCAAGGTCGTCAT 451 Query 35725 AAATATCTGCATTCTG 35740 || || | |||| || Sbjct 452 GAAGATTTTCATTTTG 467 >seq15 Length=111343173 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | ||| |||||||||||| ||||| || | | Sbjct 72888093 CCACCACGAAGTCTCAACACGAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 72888152 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| |||| | ||||| || | |||| Sbjct 72888153 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 72888212 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | | ||| ||| ||||| || | | || | ||| || | ||| || Sbjct 72888213 ATTCCTTTCTTATCCTGGATCTCGGCCTCTACATTTTATATCGTATCTGAGGGTTCAGCC 72888272 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | ||||| || || ||| | | ||||||| || ||||||||| || Sbjct 72888273 TCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCATGAAAATCTGCATTTTG 72888323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449189180498240