Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 3e-12 >seq1 Length=225584828 Score = 87.8 bits (96), Expect = 3e-12 Identities = 197/296 (67%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 214605 AAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACTCTAC 214664 ||||| || ||| ||| |||| || |||| ||||| ||||| || || || || || Sbjct 180544127 AAGGAAATGTCTGCAGAGTTGGAAGCACTCTATGGTGACATCGATGCTGTGGAGCTGTAT 180544186 Query 214665 GCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCTCGAG 214724 ||| | || | ||||| || |||| ||||||||| | ||||| | | | || Sbjct 180544187 CCTGCCCTTCTGGTAGAAAAGCCTCGTCCAGATGCCATCTTTGGTGAGACCATGGTAGAA 180544246 Query 214725 TCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGGCTAC 214784 || || ||||||||| ||| ||||| || || || || || || || | |||| Sbjct 180544247 GTTGGAGCACCGTTCTCCTTGAAAGGACTTATGGGTAATGTTATATGTTCTCCTGCCTAC 180544306 Query 214785 TGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGACCCTT 214844 ||||| | | ||| | ||| | | | |||| | ||| | | | || | || Sbjct 180544307 TGGAAGCCAAGCACTTTTGGTGGAGAAGTGGGTTTTCAAATCATCAACACTGCCTCAATT 180544366 Query 214845 CAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCCGTTAGCCGCATTCCGAGCTCC 214900 |||||||||||||| | ||||| ||||| ||||| || | ||||| | | ||| Sbjct 180544367 CAGTCTCTCATCTGCAATAACGTGAAGGGCTGTCCCTTTACTTCATTCAGTGTTCC 180544422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720766357758720