Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq21 228 6e-55 seq13 113 4e-20 seq11 102 6e-17 seq8 86.0 5e-12 >seq21 Length=149150640 Score = 228 bits (252), Expect = 6e-55 Identities = 616/924 (67%), Gaps = 45/924 (5%) Strand=Plus/Minus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 |||| | |||||| || | | |||||| | || || || | || ||||| || |||| Sbjct 44401464 TGCTGAGAGAAAACCCCTGCCGTTTTGTCATCTTCCCCATCGAGTACCATGATATCTGGC 44401405 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 | ||||| || || || | || || || ||||| || || || || || | | || | Sbjct 44401404 AGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGACCCGTCCAAGG 44401345 Query 43797 AC--TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTT 43854 || || |||| | ||| | | || || | || | | |||||||||| ||| | Sbjct 44401344 ACATTTGGCACTGGGAATTCC--TGAAGCCCGAGGAGAGATATTTTATATCCCATGTTCT 44401287 Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914 || || ||||| || || || || ||||| |||| ||| ||||| || | | || Sbjct 44401286 GGTTTTCTTTGC-GCAAGTGATGGCATAGTAAATGCAAACTTGGTGGAGCGATGTAGCCA 44401228 Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 ||||||||| | ||||||| || ||||| | ||| || ||||||||||| ||||| || Sbjct 44401227 AGAAGTTCAGGTGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCATGGAAAACAT 44401168 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034 ||||| | |||||| ||| | || || || || ||||| |||||| | || | | | Sbjct 44401167 ACATTCTGGAATGTATAGTTTCCTTATTGACACTTACATAAAAGATCCCAAAGAAAGGGA 44401108 Query 44035 ---TCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGC 44091 ||| || ||||| || ||||| | ||| | || | || ||||| ||||| Sbjct 44401107 ATTTCG---CTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGC 44401051 Query 44092 CCTTAAATGGA-TAAATTCAAA--TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGT 44148 | | | |||| | |||| | | | | ||| ||||| |||| | ||||| | Sbjct 44401050 CTTGCACTGGATTGGGGACAAAGCAGCTACCTATGGGGAACGTGTTGTAGTCTTTGCTGC 44400991 Query 44149 TGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208 | |||||||| ||||||| || | ||||| | ||||| ||| | ||||||||||| Sbjct 44400990 AGCGGAAGGCA---TCTTTTCTGGTTATTTTGCATCGATATTCTGGCTCAAGAAACGAGG 44400934 Query 44209 TTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTG 44268 |||||||||| | || ||||| ||||| | || ||| | ||||| || ||||| || Sbjct 44400933 ACTGATGCCTGGCCTCACCTTTTCCAATGAACTTATTAGTGGAGATGAGGGTTTACACTG 44400874 Query 44269 CGATTTTGCTTGCTTGTTACTTGGAT-ATCTAGGAGACGATAAGCCTTCATGTA--AGAC 44325 |||||||||||| || | || || | || | | || || || | || | ||| Sbjct 44400873 TGATTTTGCTTGCCTGAT-GTTCAATCACCTGGTACAC---AAACCAT--TGGAGGAGAG 44400820 Query 44326 AATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATT 44385 | | | ||| | || | | || || ||||||||| ||||| | || || || Sbjct 44400819 AGTAAGAGAAAGAATTATCAATGCTGTTCGGATAGAACAGGAATTCCTCACTGAGGCCTT 44400760 Query 44386 ACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTG 44444 ||||| || | || || ||||| || || | | ||||| ||||| ||||| | | | Sbjct 44400759 GCCTGTGAAGCTCATTGGGATGAATTGCAC-TCTAATGAAGCAATACATTGAGTTTGTGG 44400701 Query 44445 CAGATCGTTTAC-TTTTGGAACTGGGTTGCGATAAACACTATATT----GTACAAAACCC 44499 |||| | || | ||||||||||| | | || | || ||| | ||||| Sbjct 44400700 CAGACAG---ACATGCCGGAACTGGGTT----TTAGCAAGGTTTTCAGAGTAGAGAACCC 44400648 Query 44500 GTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGT 44559 ||||| |||||||| |||||||| || ||| || ||||| ||||| || | || Sbjct 44400647 ATTTGACTTTATGGAGAATATTTCACTGAAAG-----ACGAACTTCTTTGAGAAGAGAGT 44400593 Query 44560 TGGAGAATATCAGCGAATGGGCGT 44583 || |||||| | ||||| || Sbjct 44400592 AAAGGAGTATCAGAGGATGGGAGT 44400569 >seq13 Length=108979918 Score = 113 bits (124), Expect = 4e-20 Identities = 92/109 (84%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| |||| ||||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 10122747 CAAGAAGTTCAGATTA-CAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 10122805 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| |||||||| || || || ||||| |||||| Sbjct 10122806 CATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAGAT 10122854 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| |||| || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 10124823 GGTGAACGTGTTGTAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCA 10124882 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| | Sbjct 10124883 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTT 10124942 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 10124943 ATCAGCAGAGATGA 10124956 >seq11 Length=133663169 Score = 102 bits (112), Expect = 6e-17 Identities = 278/421 (66%), Gaps = 10/421 (2%) Strand=Plus/Minus Query 77267 GCCTCCTCATTGCCTTTGTATCCTGCGTGTCCTGGGATGTGCAGCCAGACAACCTCCAGC 77326 || || ||||||||| | |||| | || || || | ||||| ||| || |||| | Sbjct 35046455 GCTTCTTCATTGCCTATAAATCCCGAATGACCAGGAACGTGCATCCACTGAATGTCCATC 35046396 Query 77327 TCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGA-CAACTGACCCTCCGC- 77384 || | |||| ||||| || ||||| || ||||||| || || | | || Sbjct 35046395 CCCTGACTGAGCCTCTCCAGTGCCACGAAGTCCTCTTTGTTGATCACCTCTTTCCCTGCA 35046336 Query 77385 CATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACCATTGATGG 77444 | || | |||| || || | |||||| | | ||| || ||||| | |||||| || | Sbjct 35046335 CTTGT--CTTCCACCCATTTTCCTTCCAACTTTGAACACAGTTAGTTATACCATTTATAG 35046278 Query 77445 TGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTTGTTGCA 77504 | ||||| |||||||| || | ||||| || |||| || | ||| ||||||| | Sbjct 35046277 TAAACATACTGTCTGTATACAGAACCAGTTTACTGATGTTTTGAGCCTTTGCTTGTTCAA 35046218 Query 77505 GTGCTTTGGATGCAGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACAAGTCGCT 77564 | |||| | || || |||||||| || | |||||||||||| |||| ||||| Sbjct 35046217 TGGTTTTGCAGGCTGCATGGATTTCTGCTCTTTGGTTTGTCTGTCGCCCAGGAAGTCTAA 35046158 Query 77565 CTGCAACATTAAGCGGGTGATTATAACCCCAATATACGCCAATGCCAGCTCGGGCTTG-- 77622 | ||||| | || || ||||| || || | || || |||| |||| Sbjct 35046157 TGCCTACATTTAAAGGATGGCCTGGCCCCCAGTAAACACAGATTCCTGCTC---CTTGCC 35046101 Query 77623 -TTTCTGTCCGTTTGATAAGCAACAGCCGTCAGTGTAGACCACCACGGCGTCACCCATGT 77681 ||| || || || |||| ||||| |||||||||| || || ||| ||||||| Sbjct 35046100 TTTTATGCCCATTACTGTAGCAGCAGCCATCAGTGTAGATGACAACAAAGTCTCCCATGT 35046041 Query 77682 A 77682 | Sbjct 35046040 A 35046040 >seq8 Length=144306982 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 100922527 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 100922468 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| || |||||||| Sbjct 100922467 AACGAGTTTCGGAGTATCAGCG 100922446 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 |||||||| | |||||||| || || | ||| || ||| ||||||| ||| | ||||||| Sbjct 100947469 GGTTTGTCATCTTTCCAATCCAGTACCCTGATATTTGGAAAATGTATAAACAGGCACAGG 100947410 Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782 | || || |||||||||||||| || Sbjct 100947409 CTTCCTTCTGGACAGCAGAAGAGGT 100947385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396076778991640