Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq237451 100 3e-16 seq128769 100 3e-16 seq128457 100 3e-16 seq226669 86.0 8e-12 seq73905 86.0 8e-12 seq4 86.0 8e-12 >seq237451 Length=7360 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 |||||| ||||||||||| || ||| | || |||||||| | || ||| ||| Sbjct 385 ACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGTTGTGCAATTCGATCACCC 444 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 || || || | ||| || || | ||||||||| | | | ||| | |||||| || Sbjct 445 TTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTA 504 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814 |||||| |||||| ||||| || |||||||| ||||| || || ||||| || || Sbjct 505 TAATCTTCATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGAC 564 Query 22815 CTAGGAGATATTCTTCCATA 22834 | |||| || ||||||||| Sbjct 565 CGTGGAGCTACTCTTCCATA 584 >seq128769 Length=6953 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 |||||| ||||||||||| || ||| | || |||||||| | || ||| ||| Sbjct 6569 ACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGTTGTGCAATTCGATCACCC 6510 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 || || || | ||| || || | ||||||||| | | | ||| | |||||| || Sbjct 6509 TTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTA 6450 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814 |||||| |||||| ||||| || |||||||| ||||| || || ||||| || || Sbjct 6449 TAATCTTCATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGAC 6390 Query 22815 CTAGGAGATATTCTTCCATA 22834 | |||| || ||||||||| Sbjct 6389 CGTGGAGCTACTCTTCCATA 6370 >seq128457 Length=7192 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 |||||| ||||||||||| || ||| | || |||||||| | || ||| ||| Sbjct 385 ACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGTTGTGCAATTCGATCACCC 444 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 || || || | ||| || || | ||||||||| | | | ||| | |||||| || Sbjct 445 TTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTA 504 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814 |||||| |||||| ||||| || |||||||| ||||| || || ||||| || || Sbjct 505 TAATCTTCATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGAC 564 Query 22815 CTAGGAGATATTCTTCCATA 22834 | |||| || ||||||||| Sbjct 565 CGTGGAGCTACTCTTCCATA 584 >seq226669 Length=10677 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 15/222 (7%) Strand=Plus/Minus Query 22580 GGATCCAAAACCA---GAACCCCCTCTTTCTGTGATACTCAATTCTTCCACAGTCTTTAC 22636 ||| ||||||||| ||||||| |||| ||| || |||| || | || Sbjct 221 GGAACCAAAACCACCTGAACCCC---TTTCGGTG---------TCATCCAAAGCTTGAAC 174 Query 22637 TTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCCTT 22696 |||| ||||||||||| || ||| | || |||||||| | || ||| ||||| Sbjct 173 TTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGTTGTGCAATTCGATCACCCTT 114 Query 22697 ATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTGTA 22756 || || | ||| || || | ||||||||| | | | ||| | |||||| || || Sbjct 113 TTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATA 54 Query 22757 ATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATT 22798 |||| |||||| ||||| || |||||||| ||||| || || Sbjct 53 ATCTTCATCTATGACACCAGCTCCTACATCAATAAAGTGTTT 12 >seq73905 Length=5251 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 15/222 (7%) Strand=Plus/Plus Query 22580 GGATCCAAAACCA---GAACCCCCTCTTTCTGTGATACTCAATTCTTCCACAGTCTTTAC 22636 ||| ||||||||| ||||||| |||| ||| || |||| || | || Sbjct 5031 GGAACCAAAACCACCTGAACCCC---TTTCGGTG---------TCATCCAAAGCTTGAAC 5078 Query 22637 TTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCCTT 22696 |||| ||||||||||| || ||| | || |||||||| | || ||| ||||| Sbjct 5079 TTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGTTGTGCAATTCGATCACCCTT 5138 Query 22697 ATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTGTA 22756 || || | ||| || || | ||||||||| | | | ||| | |||||| || || Sbjct 5139 TTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATA 5198 Query 22757 ATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATT 22798 |||| |||||| ||||| || |||||||| ||||| || || Sbjct 5199 ATCTTCATCTATGACACCAGCTCCTACATCAATAAAGTGTTT 5240 >seq4 Length=172585720 Score = 86.0 bits (94), Expect = 8e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 32674 TGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATAATGA 32733 |||||| || ||| | |||||||| | || ||| | || || | || || || ||| Sbjct 78164982 TGTGGTGGTACTTTGTTTCTAAAGGAGTTGAGTATTTGGACACAGTGTTTTTTATTCTGA 78164923 Query 32734 GAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTTACTT 32793 |||||||| ||||| ||| || | || || || || || | ||| |||||||| | Sbjct 78164922 GAAAGAAAAACAACCAGGTTTCTTTCCTTCATGTGTATCATCACTGTACGATGTTTACCT 78164863 Query 32794 TAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 | | ||||| || ||||| ||| ||||||||||||| Sbjct 78164862 TGTGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 78164826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 601034019214720