Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq18 125 6e-24 seq207700 118 9e-22 seq13 118 9e-22 seq1 114 1e-20 seq2 102 7e-17 seq5 95.1 1e-14 seq249523 87.8 1e-12 seq194578 87.8 1e-12 seq6 82.4 6e-11 >seq18 Length=70235451 Score = 125 bits (138), Expect = 6e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| || || Sbjct 8839046 AGGCCCGTGATGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 8839105 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| ||||| |||||||| ||||| || || ||||| | || | Sbjct 8839106 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 8839165 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || || ||||| || | || ||||| ||||| || ||||| || Sbjct 8839166 ACATAGAACTGGCAGAGAGCATGGCATGGAGGCAGTGCCATCAG 8839209 Score = 118 bits (130), Expect = 9e-22 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| ||||| || ||||||||||||||||| || || || || |||| ||| Sbjct 8843843 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTC 8843902 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || ||||| ||| ||| ||| ||||||||||||||| ||| || ||||| || Sbjct 8843903 CCCTTCTTCTCTGGCGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATC 8843962 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| || || ||||| ||| |||||||| | ||||| || || Sbjct 8843963 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTAGATCC 8844010 >seq207700 Length=1268 Score = 118 bits (130), Expect = 9e-22 Identities = 185/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || |||||||| |||| || || || | | Sbjct 494 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 553 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 554 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 613 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 110557 ||| || ||| |||||||| || | |||| | ||| | || | | | || || || | Sbjct 614 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTCC 672 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 110616 || || |||| ||||| || ||||| || | |||||||||| ||||| || Sbjct 673 TGAG------CGGCGGCCAGGGCAGGTCCCCGTTCTTGCGGATGCCCATGTTCTGG-GAC 725 Query 110617 GCGGCCACGATACCGTTCAG 110636 | || ||||||| ||| || Sbjct 726 ACAGCGACGATACAGTTTAG 745 >seq13 Length=108979918 Score = 118 bits (130), Expect = 9e-22 Identities = 186/260 (72%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || |||||||| |||| || || || || | Sbjct 68549071 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCTTT 68549012 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 68549011 TAAAGGTCAATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 68548952 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 110557 ||| || ||| |||||||| | | |||| | ||| | || | | | || || || | Sbjct 68548951 CTGTTTACCTTCTACTGAAGAGTTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTCC 68548893 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 110616 | ||| | |||| ||||| || ||||| || |||||||||||| ||||| || Sbjct 68548892 TGA-----GCA-GCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GAC 68548840 Query 110617 GCGGCCACGATACCGTTCAG 110636 | || ||||| | ||| || Sbjct 68548839 ACAGCGACGATGCAGTTTAG 68548820 >seq1 Length=225584828 Score = 114 bits (126), Expect = 1e-20 Identities = 189/267 (71%), Gaps = 12/267 (4%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || |||||||| |||| || || || | | Sbjct 142399055 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGTACTAAATTAATTCTACCCTT 142398996 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 142398995 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 142398936 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 110557 ||| || ||| |||||||| || | |||| | ||| | || | | | || || || | Sbjct 142398935 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTCC 142398877 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 110616 || || |||| ||||| || || || || |||||||||||| ||||| || Sbjct 142398876 TGAG------CGGCGGCCAGGGCAGGTCCCCATTCTTGCCGATGCCCATGTTCTGG-GAC 142398824 Query 110617 GCGGCCACGATACCGTTCAG--AATGA 110641 | || ||||| | ||| || ||||| Sbjct 142398823 ACAGCGACGATGCAGTTTAGCAAATGA 142398797 >seq2 Length=204787373 Score = 102 bits (112), Expect = 7e-17 Identities = 181/261 (69%), Gaps = 11/261 (4%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || |||||||| |||| || || || || | Sbjct 15098243 ATGAGCTCCTTGAGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 15098302 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 15098303 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 15098362 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC---GAAAGTGTTTAAAATCTTT 110555 ||| || ||| |||||||| | | ||| || || | || | | || || || Sbjct 15098363 CTGTTTACCTTCTACTGAAGAAGGTGTGGT---GGTTCTCTGGAAATACCTGAATTCATT 15098419 Query 110556 GCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACA 110615 | | || | | |||| ||||| || || || || ||||||||||||| | | | Sbjct 15098420 CCTGATTC---AACG--GCCAGGGCAGTTCCCCATTCTTGCCGATGCCCATGTTTTGGGA 15098474 Query 110616 CGCGGCCACGATACCGTTCAG 110636 | | || ||||| | ||| || Sbjct 15098475 CACAGCGACGATGCAGTTTAG 15098495 >seq5 Length=190429646 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || |||||||| ||| || || || | | Sbjct 15822765 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGATCTAAATTAATTCTACCCTT 15822824 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | |||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 15822825 TAAAGGTTGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 15822884 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 110530 ||| || ||| |||||||| || | ||||| Sbjct 15822885 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCA 15822916 >seq249523 Length=30393 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 110392 GGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTC 110451 || || || || || || |||||||| |||| || || || || | | ||||| || | Sbjct 6174 GGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTTTAAAGGTCGATCC 6233 Query 110452 TTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTG 110511 || || || ||||||||||| ||||| |||| ||| ||||||| ||||| || ||| Sbjct 6234 TTCTCAGGAATGGAGAACCAGGTCTTCCTACGCATAATCACCAGATTCTGTTTACCTTCT 6293 Query 110512 ACTGAAGA 110519 |||||||| Sbjct 6294 ACTGAAGA 6301 >seq194578 Length=12589 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 110392 GGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTC 110451 || || || || || || |||||||| |||| || || || || | | ||||| || | Sbjct 6025 GGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTTTAAAGGTCGATCC 5966 Query 110452 TTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTG 110511 || || || ||||||||||| ||||| |||| ||| ||||||| ||||| || ||| Sbjct 5965 TTCTCAGGAATGGAGAACCAGGTCTTCCTACGCATAATCACCAGATTCTGTTTACCTTCT 5906 Query 110512 ACTGAAGA 110519 |||||||| Sbjct 5905 ACTGAAGA 5898 >seq6 Length=180051392 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || |||||||| |||| || || || | | | ||||| |||||| || || Sbjct 77422498 TTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCGATTCTTCTCAGGA 77422557 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||||||||| ||||||| ||||||| ||||| || ||| Sbjct 77422558 ATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCT 77422605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404900453138976