Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5 111 1e-19 seq11 98.7 6e-16 >seq5 Length=190429646 Score = 111 bits (122), Expect = 1e-19 Identities = 165/230 (72%), Gaps = 7/230 (3%) Strand=Plus/Minus Query 34483 CCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGT 34542 |||| || |||||||||| || || ||| ||| ||| ||||| || ||||| || Sbjct 87219652 CCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTC---TTGGATGTTGTAGTCTGAGAGA 87219596 Query 34543 G--TTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCA 34600 | | || | ||||| || ||||| | ||||||||| | |||||| ||||| || || | Sbjct 87219595 GAGTGCGGCCATCTTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGA 87219536 Query 34601 CTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACT 34659 |||||||||||| ||| ||| | ||| ||| | ||| ||||| | ||| || Sbjct 87219535 TACCCTCCTTGTCT-TGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 87219477 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | ||| || ||||| || | | || |||||||| ||||||||||| Sbjct 87219476 TCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTT 87219427 >seq11 Length=133663169 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||||| || || ||| ||| || || ||||| || || || Sbjct 125064584 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 125064643 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || || ||||| || || | ||| ||||| || || Sbjct 125064644 AGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 125064703 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||||||||| ||||||| || | | ||| ||||| | |||||| Sbjct 125064704 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATAGTGTCACTGGGCTCCACC 125064763 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || | || ||||| || |||||||| Sbjct 125064764 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 125064810 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||| | || || ||| ||| || || ||||| || || || Sbjct 125064356 CCACCTCTGAGACGGAGCACGAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 125064415 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || || ||||| || || | ||| ||||| || || Sbjct 125064416 AGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 125064475 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||||||||| ||||||| || | | ||| ||||| | |||||| Sbjct 125064476 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATAGTGTCACTGGGCTCCACC 125064535 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || | || ||||| || |||||||| Sbjct 125064536 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 125064582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313637449733624